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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:242.6 nTPM
HPA:242.6 nTPM
GTEx:139.0 nTPM
FANTOM5:199.3 Scaled Tags Per Million
Pig:65.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 242.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 233.1
1981 Female, age 72, midline 247.4
2048 Male, age 55, midline 234.1
2194 Female, age 79, both hemispheres 230.4
2565 Male, age 75, midline 227.6
2816 Male, age 47, midline 226.0
Cervical spinal cord, dorsal horn
nTPM: 240.9
2173 Female, age 72, unknown 261.7
2069 Male, age 47, both hemispheres 250.6
2296 Male, age 66, both hemispheres 242.0
1877 Male, age 55, unknown 237.9
2297 Male, age 75, both hemispheres 228.9
2721 Male, age 90, both hemispheres 224.0
Cervical spinal cord, ventral horn
nTPM: 242.6
2480 Male, age 75, both hemispheres 256.3
2098 Female, age 72, unknown 251.8
2809 Male, age 90, both hemispheres 245.7
2068 Male, age 55, unknown 240.3
2295 Male, age 66, both hemispheres 235.4
2820 Female, age 79, both hemispheres 226.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 139.0
Samples: 159

Max nTPM: 246.1
Min nTPM: 73.8
Std nTPM: 28.4
Median nTPM: 135.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 246.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 225.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 221.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 204.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 194.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 191.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 190.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 188.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 186.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 186.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 185.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 183.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 182.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 179.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 178.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 178.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 175.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 174.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 172.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 171.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 171.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 170.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 170.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 169.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 168.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 166.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 165.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 165.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 161.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 161.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 161.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 159.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 159.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 159.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 158.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 158.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 158.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 157.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 156.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 155.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 155.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 155.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 154.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 154.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 153.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 152.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 151.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 151.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 151.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 151.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 150.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 150.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 149.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 149.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 147.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 146.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 146.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 145.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 145.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 145.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 145.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 144.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 143.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 142.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 142.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 141.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 141.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 140.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 140.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 140.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 139.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 139.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 138.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 138.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 137.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 137.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 136.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 135.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 134.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 134.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 133.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 133.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 131.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 131.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 130.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 130.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 130.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 130.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 129.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 129.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 129.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 128.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 128.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 127.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 126.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 126.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 126.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 125.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 125.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 124.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 124.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 124.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 123.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 123.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 123.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 122.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 122.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 121.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 121.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 121.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 120.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 120.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 119.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 119.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 119.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 118.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 118.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 117.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 117.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 116.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 116.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 116.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 116.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 116.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 115.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 112.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 112.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 111.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 111.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 110.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 110.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 110.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 109.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 109.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 109.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 108.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 108.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 108.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 108.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 108.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 106.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 105.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 104.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 104.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 104.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 104.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 103.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 103.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 99.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 90.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 81.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 74.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 73.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 199.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 199.3
FF:10181-103D1 60 years, female 290.1
FF:10159-103A6 76 years, female 108.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 47.5
Samples: 4

Max nTPM: 53.9
Min nTPM: 43.4
Sample A Female 53.9
Sample B Female 45.7
Sample C Male 43.4
Sample D Male 46.8
Ventral spinal cord
nTPM: 65.8
Samples: 4

Max nTPM: 74.0
Min nTPM: 50.1
Sample A Female 69.4
Sample B Female 74.0
Sample C Male 69.5
Sample D Male 50.1

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