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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.0 nTPM
HPA:84.0 nTPM
GTEx:44.4 nTPM
FANTOM5:0.3 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 84.0
Sample id Sample description nTPM
Amygdala
nTPM: 84.0
2814 Male, age 76, right hemisphere 90.1
2695 Female, age 67, right hemisphere 83.5
1987 Female, age 91, left hemisphere 83.4
2517 Female, age 94, left hemisphere 82.3
2514 Male, age 75, right hemisphere 80.6
Basal amygdala
nTPM: 81.0
2685 Female, age 94, left hemisphere 83.6
2609 Male, age 75, right hemisphere 83.2
2243 Female, age 91, right hemisphere 82.9
2110 Male, age 80, left hemisphere 82.4
1955 Male, age 76, both hemispheres 80.5
2827 Female, age 67, right hemisphere 73.2
Central amygdala
nTPM: 81.3
1905 Male, age 76, both hemispheres 86.5
2826 Female, age 94, left hemisphere 83.3
2239 Male, age 80, left hemisphere 80.3
2701 Female, age 91, right hemisphere 78.2
2515 Male, age 75, right hemisphere 78.0
Corticomedial amygdala
nTPM: 79.5
2829 Male, age 80, left hemisphere 85.9
2240 Male, age 76, both hemispheres 81.3
2242 Female, age 91, right hemisphere 80.6
2429 Female, age 94, left hemisphere 77.8
2428 Male, age 75, right hemisphere 76.1
2535 Female, age 67, right hemisphere 75.2
Lateral amygdala
nTPM: 80.5
1883 Male, age 76, both hemispheres 84.7
2534 Female, age 94, left hemisphere 84.6
2516 Male, age 75, right hemisphere 79.2
2256 Male, age 80, left hemisphere 79.1
2255 Female, age 91, right hemisphere 79.0
2830 Female, age 67, right hemisphere 76.4
Stria terminalis, bed nucleus
nTPM: 79.0
1974 Female, age 91, both hemispheres 80.3
2486 Female, age 94, both hemispheres 79.9
2201 Male, age 74, unknown 76.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 44.4
Samples: 152

Max nTPM: 156.8
Min nTPM: 14.2
Std nTPM: 23.2
Median nTPM: 40.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 156.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 150.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 142.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 121.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 106.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 98.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 97.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 96.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 82.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 82.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 75.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 70.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 70.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 68.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 67.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 65.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 65.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 64.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 63.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 58.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 58.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 57.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 56.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 56.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 56.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 56.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 55.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 55.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 53.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 52.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 52.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 51.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 50.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 50.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 50.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 50.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 50.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 50.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 49.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 49.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 48.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 48.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 48.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 48.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 47.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 47.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 47.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 47.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 46.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 46.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 46.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 45.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 45.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 45.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 45.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 44.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 44.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 44.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 44.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 43.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 43.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 43.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 42.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 42.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 41.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 41.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 41.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 41.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 41.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 41.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 40.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 40.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 40.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 39.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 39.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 39.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 39.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 39.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 39.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 38.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 38.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 38.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 38.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 38.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 38.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 37.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 37.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 37.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 36.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 36.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 36.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 35.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 35.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 34.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 34.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 33.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 33.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 33.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 33.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 32.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 32.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 32.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 31.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 31.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 31.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 31.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 31.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 31.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 30.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 30.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 30.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 30.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 29.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 29.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 29.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 28.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 28.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 28.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 27.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 27.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 27.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 27.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 27.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 26.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 26.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 26.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 25.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 24.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 23.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 23.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 22.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 21.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 19.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 18.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 18.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 18.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 18.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 18.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 18.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 18.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 17.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 15.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 15.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 14.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 14.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 0.3
FF:10151-102I7 76 years, female 0.3

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