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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:57.8 nTPM
HPA:57.8 nTPM
GTEx:56.2 nTPM
FANTOM5:25.5 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 57.8
Sample id Sample description nTPM
Amygdala
nTPM: 57.8
2514 Male, age 75, right hemisphere 58.8
2695 Female, age 67, right hemisphere 58.3
2814 Male, age 76, right hemisphere 58.2
1987 Female, age 91, left hemisphere 56.9
2517 Female, age 94, left hemisphere 56.9
Basal amygdala
nTPM: 55.7
2609 Male, age 75, right hemisphere 58.9
2685 Female, age 94, left hemisphere 55.8
2827 Female, age 67, right hemisphere 55.8
2110 Male, age 80, left hemisphere 54.8
1955 Male, age 76, both hemispheres 54.6
2243 Female, age 91, right hemisphere 54.5
Central amygdala
nTPM: 55.9
2826 Female, age 94, left hemisphere 59.5
1905 Male, age 76, both hemispheres 56.8
2515 Male, age 75, right hemisphere 55.6
2239 Male, age 80, left hemisphere 53.9
2701 Female, age 91, right hemisphere 53.7
Corticomedial amygdala
nTPM: 54.7
2428 Male, age 75, right hemisphere 56.6
2429 Female, age 94, left hemisphere 55.8
2829 Male, age 80, left hemisphere 55.6
2535 Female, age 67, right hemisphere 53.9
2240 Male, age 76, both hemispheres 53.8
2242 Female, age 91, right hemisphere 52.4
Lateral amygdala
nTPM: 56.9
2534 Female, age 94, left hemisphere 59.1
2516 Male, age 75, right hemisphere 58.0
1883 Male, age 76, both hemispheres 57.2
2256 Male, age 80, left hemisphere 56.4
2830 Female, age 67, right hemisphere 55.9
2255 Female, age 91, right hemisphere 54.6
Stria terminalis, bed nucleus
nTPM: 55.3
1974 Female, age 91, both hemispheres 57.3
2486 Female, age 94, both hemispheres 54.9
2201 Male, age 74, unknown 53.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 56.2
Samples: 152

Max nTPM: 223.0
Min nTPM: 26.2
Std nTPM: 21.2
Median nTPM: 51.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 223.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 128.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 109.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 102.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 95.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 94.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 94.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 91.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 91.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 86.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 84.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 79.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 78.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 78.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 76.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 74.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 72.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 69.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 69.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 69.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 69.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 68.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 68.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 68.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 68.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 68.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 67.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 67.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 66.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 66.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 66.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 65.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 64.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 63.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 63.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 63.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 63.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 63.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 62.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 62.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 61.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 61.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 61.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 60.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 60.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 60.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 59.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 59.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 58.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 58.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 58.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 57.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 57.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 56.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 55.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 55.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 55.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 55.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 54.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 54.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 54.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 54.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 52.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 52.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 52.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 51.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 51.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 51.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 51.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 51.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 51.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 51.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 51.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 51.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 51.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 51.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 51.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 50.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 50.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 50.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 50.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 49.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 49.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 49.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 49.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 48.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 48.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 47.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 47.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 47.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 47.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 47.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 46.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 46.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 46.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 46.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 46.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 45.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 45.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 45.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 45.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 44.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 44.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 44.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 44.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 44.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 43.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 43.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 43.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 43.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 41.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 41.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 41.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 41.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 41.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 41.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 40.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 40.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 39.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 39.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 38.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 37.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 37.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 35.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 35.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 34.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 34.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 32.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 31.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 31.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 31.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 30.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 28.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 26.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 25.5
FF:10151-102I7 76 years, female 25.5

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