MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.9 nTPM
HPA:58.9 nTPM
GTEx:50.9 nTPM
FANTOM5:32.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.4
2219 Male, age 76, both hemispheres 58.2
2586 Male, age 75, left hemisphere 57.7
2411 Female, age 72, unknown 57.6
2666 Male, age 74, left hemisphere 56.7
2828 Female, age 72, unknown 56.5
1827 Male, age 72, unknown 56.1
1870 Female, age 42, unknown 55.8
1830 Male, age 51, unknown 55.4
2019 Male, age 18, unknown 55.1
1833 Male, age 53, unknown 54.5
Dorsal raphe nucleus
nTPM: 55.9
2298 Female, age 72, unknown 56.8
1828 Male, age 53, unknown 56.3
2047 Male, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 55.5
2016 Female, age 72, unknown 55.1
Inferior colliculus
nTPM: 55.3
1848 Female, age 42, unknown 56.0
2097 Female, age 72, unknown 55.9
1890 Male, age 53, unknown 55.1
2849 Male, age 72, unknown 54.1
Median raphe nucleus
nTPM: 54.7
2220 Male, age 76, midline 54.7
Pedunculopontine tegmental nucleus
nTPM: 56.1
2334 Male, age 80, both hemispheres 57.1
1921 Female, age 85, both hemispheres 56.6
2338 Male, age 61, both hemispheres 54.4
Periaquaductal grey, anterior
nTPM: 58.9
1947 Male, age 18, unknown 62.2
2502 Female, age 75, unknown 58.4
1795 Male, age 51, unknown 56.1
Periaquaductal grey, dorsal
nTPM: 54.8
1840 Male, age 53, unknown 56.0
2850 Male, age 76, both hemispheres 55.0
1831 Male, age 72, unknown 54.4
2464 Female, age 72, unknown 53.7
Periaquaductal grey, lateral
nTPM: 53.7
2140 Male, age 76, both hemispheres 54.2
2053 Male, age 18, unknown 54.1
2272 Male, age 74, both hemispheres 52.8
Pretectal area
nTPM: 55.5
2007 Male, age 72, unknown 57.8
1816 Male, age 51, unknown 57.4
1817 Female, age 42, unknown 57.0
2316 Male, age 76, right hemisphere 56.2
1944 Female, age 72, unknown 56.0
2667 Female, age 75, unknown 55.1
2825 Male, age 18, unknown 55.0
1815 Male, age 53, unknown 54.6
2224 Female, age 72, unknown 54.5
2273 Male, age 74, both hemispheres 53.9
2407 Male, age 75, both hemispheres 53.0
Red nucleus
nTPM: 56.6
2725 Female, age 75, unknown 58.6
1821 Female, age 72, unknown 58.3
2227 Male, age 72, unknown 57.5
2769 Male, age 72, unknown 57.1
2588 Male, age 74, left hemisphere 56.8
1865 Male, age 51, unknown 56.7
2503 Female, age 72, unknown 56.5
1954 Female, age 42, unknown 56.1
1904 Male, age 53, unknown 56.0
2823 Male, age 76, right hemisphere 55.9
2785 Male, age 18, unknown 55.6
2584 Male, age 75, left hemisphere 54.3
Substantia nigra
nTPM: 57.2
1916 Female, age 42, unknown 61.6
1851 Male, age 51, unknown 60.9
1941 Male, age 53, unknown 59.2
2665 Male, age 74, both hemispheres 57.5
2409 Female, age 72, unknown 56.6
2699 Male, age 18, unknown 56.5
1889 Female, age 72, unknown 56.2
2241 Male, age 72, unknown 55.4
2583 Male, age 75, right hemisphere 54.3
2590 Female, age 75, unknown 53.5
Superior colliculus
nTPM: 55.6
2668 Female, age 75, unknown 58.3
1796 Male, age 53, unknown 56.1
1895 Male, age 76, right hemisphere 55.9
2587 Male, age 74, left hemisphere 55.9
1995 Male, age 72, unknown 55.5
2261 Male, age 18, unknown 55.5
2087 Female, age 72, unknown 55.0
1913 Female, age 42, unknown 54.8
2664 Male, age 75, both hemispheres 54.8
1839 Male, age 51, unknown 54.6
Ventral tegmental area
nTPM: 57.5
1915 Female, age 42, unknown 59.8
2410 Female, age 72, unknown 59.0
2218 Male, age 76, both hemispheres 57.0
2021 Male, age 53, unknown 56.7
1942 Male, age 51, unknown 56.3
2223 Female, age 72, unknown 56.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.9
Samples: 139

Max nTPM: 99.0
Min nTPM: 24.3
Std nTPM: 13.3
Median nTPM: 49.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 99.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 96.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 92.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 90.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 86.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 84.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 77.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 75.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 72.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 70.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 69.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.