BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.0 nTPM
HPA:38.0 nTPM
GTEx:58.8 nTPM
FANTOM5:20.0 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:16.6 nTPM
Allen mouse:2.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023384
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.0
2289 Male, age 61, right hemisphere 38.3
1781 Male, age 74, unknown 36.9
2290 Female, age 72, unknown 36.8
2846 Female, age 79, unknown 36.3
1854 Male, age 80, left hemisphere 36.2
2288 Male, age 75, left hemisphere 35.0
1857 Female, age 85, left hemisphere 34.4
2481 Female, age 94, left hemisphere 34.1
Claustrum
nTPM: 38.0
2645 Female, age 72, unknown 41.9
2198 Male, age 80, both hemispheres 39.2
2292 Female, age 85, both hemispheres 38.8
1956 Male, age 74, unknown 38.4
2491 Male, age 75, both hemispheres 38.4
2284 Female, age 91, both hemispheres 37.9
2568 Male, age 61, both hemispheres 37.6
2196 Female, age 79, unknown 36.2
2392 Female, age 94, both hemispheres 33.6
Globus pallidus, externus
nTPM: 36.7
2567 Female, age 72, unknown 40.9
2772 Female, age 79, unknown 37.5
2646 Male, age 61, right hemisphere 35.6
1996 Male, age 80, right hemisphere 34.8
2395 Male, age 75, both hemispheres 34.8
Globus pallidus, internus
nTPM: 35.8
2566 Female, age 72, unknown 38.9
2778 Female, age 91, both hemispheres 37.1
2037 Male, age 80, right hemisphere 36.7
2111 Female, age 85, right hemisphere 36.6
1818 Male, age 74, unknown 34.0
2483 Female, age 94, right hemisphere 33.9
2287 Male, age 75, right hemisphere 33.6
Nucleus accumbens
nTPM: 35.8
1783 Male, age 74, unknown 38.4
2824 Male, age 61, right hemisphere 37.8
1806 Female, age 85, left hemisphere 37.2
2732 Male, age 80, right hemisphere 36.7
1856 Female, age 91, right hemisphere 35.8
2286 Male, age 75, left hemisphere 34.4
2698 Female, age 72, unknown 34.3
2391 Female, age 94, left hemisphere 32.1
Nucleus basalis of Meynert
nTPM: 36.1
2484 Female, age 94, left hemisphere 37.3
2393 Male, age 80, right hemisphere 36.2
2569 Male, age 61, both hemispheres 35.8
2821 Male, age 75, both hemispheres 35.3
Nucleus of the diagonal band
nTPM: 36.2
2029 Male, age 61, right hemisphere 40.0
2775 Male, age 80, right hemisphere 37.1
2195 Female, age 85, both hemispheres 36.1
1979 Male, age 74, unknown 34.8
1812 Female, age 91, both hemispheres 32.9
Olfactory tubercle
nTPM: 36.3
1998 Female, age 91, both hemispheres 37.6
2487 Female, age 94, left hemisphere 37.1
2856 Male, age 75, right hemisphere 36.2
1846 Male, age 80, right hemisphere 34.4
Putamen
nTPM: 36.9
2466 Female, age 79, unknown 40.2
2489 Female, age 72, unknown 40.0
2647 Male, age 75, left hemisphere 36.6
1937 Female, age 91, right hemisphere 36.5
1838 Male, age 80, right hemisphere 35.7
1829 Male, age 74, unknown 35.4
2482 Female, age 94, left hemisphere 34.0
Septal nuclei
nTPM: 36.0
2059 Female, age 85, both hemispheres 38.7
1960 Male, age 74, unknown 37.4
2031 Female, age 72, unknown 37.0
2629 Female, age 94, right hemisphere 35.4
2009 Female, age 91, both hemispheres 35.0
2394 Male, age 61, left hemisphere 34.9
2199 Male, age 80, right hemisphere 33.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 58.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.7
Samples: 246

Max nTPM: 96.2
Min nTPM: 22.6
Std nTPM: 13.5
Median nTPM: 51.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 96.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 93.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 90.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 90.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 86.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 86.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 85.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 81.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 80.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 78.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 78.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.0
Samples: 246

Max nTPM: 113.4
Min nTPM: 25.9
Std nTPM: 14.9
Median nTPM: 53.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 113.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 107.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 106.0
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 100.0
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 90.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 89.1
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 88.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 86.6
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 86.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 85.9
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 85.6
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Brain - Putamen (basal ganglia)
Average nTPM: 58.8
Samples: 205

Max nTPM: 103.0
Min nTPM: 24.8
Std nTPM: 14.9
Median nTPM: 57.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 103.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 99.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 97.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 97.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 97.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 95.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 93.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 92.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 92.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 88.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 87.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.7
FF:10164-103B2 76 years, female 19.7
Globus pallidus
Scaled Tags Per Million: 15.8
FF:10161-103A8 76 years, female 19.1
FF:10175-103C4 60 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 15.3
FF:10037-101F1 23-56 years, mixed 15.3
Putamen
Scaled Tags Per Million: 20.0
FF:10176-103C5 60 years, female 20.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Caudate
nTPM: 8.6
Samples: 4

Max nTPM: 9.9
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 9.9
Sample C Male 9.9
Sample D Male 7.9
Putamen
nTPM: 9.1
Samples: 4

Max nTPM: 11.1
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 8.6
Sample C Male 11.1
Sample D Male 10.1
Septum
nTPM: 6.6
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.6
Sample A Female 7.5
Sample B Female 7.2
Sample C Male 5.6
Sample D Male 6.0
Ventral pallidum
nTPM: 7.0
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.4
Sample A Female 6.5
Sample B Female 8.2
Sample C Male 6.9
Sample D Male 6.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.2
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.2
Sample A Male 14.6
Sample B Male 16.4
Sample C Female 14.2
Sample D Female 15.6
Septum
nTPM: 14.7
Samples: 4

Max nTPM: 16.2
Min nTPM: 13.1
Sample A Male 16.2
Sample B Male 13.1
Sample C Female 14.8
Sample D Female 14.5
Ventral forebrain
nTPM: 16.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 14.4
Sample A Male 16.9
Sample B Male 14.4
Sample C Female 17.2
Sample D Female 17.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
68341884 Antisense, RP_041207_02_D04, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 2.4
68341884 Antisense, RP_041207_02_D04, Mouse strain C57BL/6J (56 days, male) 2.4

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