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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:55.9 nTPM
HPA:55.9 nTPM
GTEx:73.2 nTPM
FANTOM5:46.1 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:147.2 nTPM
Allen mouse:6.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 55.9
Sample id Sample description nTPM
Amygdala
nTPM: 54.5
2517 Female, age 94, left hemisphere 56.8
2814 Male, age 76, right hemisphere 56.5
1987 Female, age 91, left hemisphere 54.5
2514 Male, age 75, right hemisphere 52.8
2695 Female, age 67, right hemisphere 51.8
Basal amygdala
nTPM: 54.0
2243 Female, age 91, right hemisphere 57.1
2609 Male, age 75, right hemisphere 56.9
2685 Female, age 94, left hemisphere 55.1
2110 Male, age 80, left hemisphere 54.3
1955 Male, age 76, both hemispheres 52.5
2827 Female, age 67, right hemisphere 48.4
Central amygdala
nTPM: 55.1
2826 Female, age 94, left hemisphere 60.5
1905 Male, age 76, both hemispheres 54.4
2239 Male, age 80, left hemisphere 54.2
2515 Male, age 75, right hemisphere 54.0
2701 Female, age 91, right hemisphere 52.5
Corticomedial amygdala
nTPM: 53.7
2429 Female, age 94, left hemisphere 56.1
2829 Male, age 80, left hemisphere 55.3
2428 Male, age 75, right hemisphere 55.0
2242 Female, age 91, right hemisphere 53.1
2535 Female, age 67, right hemisphere 52.5
2240 Male, age 76, both hemispheres 50.1
Lateral amygdala
nTPM: 54.9
2534 Female, age 94, left hemisphere 62.3
2255 Female, age 91, right hemisphere 56.5
1883 Male, age 76, both hemispheres 54.8
2516 Male, age 75, right hemisphere 54.5
2256 Male, age 80, left hemisphere 53.3
2830 Female, age 67, right hemisphere 47.9
Stria terminalis, bed nucleus
nTPM: 55.9
2486 Female, age 94, both hemispheres 58.4
1974 Female, age 91, both hemispheres 56.6
2201 Male, age 74, unknown 52.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 73.2
Samples: 152

Max nTPM: 120.7
Min nTPM: 38.7
Std nTPM: 17.1
Median nTPM: 70.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 120.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 114.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 112.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 112.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 112.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 109.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 107.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 107.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 104.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 103.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 103.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 102.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 102.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 101.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 101.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 98.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 96.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 94.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 94.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 91.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 91.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 90.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 88.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 88.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 88.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 87.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 87.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 87.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 87.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 86.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 85.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 85.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 85.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 85.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 84.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 84.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 84.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 84.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 83.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 83.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 83.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 83.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 83.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 83.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 82.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 81.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 80.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 79.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 79.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 79.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 79.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 78.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 78.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 78.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 77.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 77.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 76.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 75.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 75.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 75.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 75.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 75.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 74.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 74.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 74.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 74.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 73.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 73.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 72.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 71.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 71.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 70.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 70.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 70.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 70.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 70.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 70.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 68.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 68.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 68.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 67.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 67.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 67.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 67.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 66.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 66.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 65.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 65.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 64.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 63.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 63.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 63.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 62.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 62.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 62.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 62.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 61.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 61.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 61.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 61.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 60.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 60.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 60.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 60.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 60.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 59.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 59.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 59.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 58.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 57.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 57.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 57.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 56.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 56.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 55.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 55.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 55.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 54.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 54.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 54.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 53.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 53.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 52.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 51.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 51.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 50.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 49.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 48.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 48.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 48.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 47.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 45.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 42.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 41.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 38.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 46.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 46.1
FF:10151-102I7 76 years, female 46.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.1
Pig sample Sample description nTPM
Amygdala
nTPM: 37.1
Samples: 4

Max nTPM: 47.2
Min nTPM: 32.4
Sample A Female 47.2
Sample B Female 32.4
Sample C Male 35.8
Sample D Male 32.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 147.2
Samples: 4

Max nTPM: 152.3
Min nTPM: 142.3
Sample A Male 149.4
Sample B Male 152.3
Sample C Female 144.7
Sample D Female 142.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.8
67978711 Antisense, RP_040923_01_F07, Mouse strain C57BL/6J (56 days, male) 6.8

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