BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.7 nTPM
HPA:56.7 nTPM
GTEx:73.6 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:45.1 nTPM
Mouse:143.1 nTPM
Allen mouse:4.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.5
2288 Male, age 75, left hemisphere 56.3
1781 Male, age 74, unknown 53.6
1857 Female, age 85, left hemisphere 53.0
2846 Female, age 79, unknown 52.8
2481 Female, age 94, left hemisphere 51.9
2290 Female, age 72, unknown 51.7
1854 Male, age 80, left hemisphere 50.5
2289 Male, age 61, right hemisphere 50.4
Claustrum
nTPM: 55.7
2491 Male, age 75, both hemispheres 59.7
2198 Male, age 80, both hemispheres 59.2
2568 Male, age 61, both hemispheres 57.9
1956 Male, age 74, unknown 55.8
2292 Female, age 85, both hemispheres 55.7
2284 Female, age 91, both hemispheres 55.4
2645 Female, age 72, unknown 54.3
2196 Female, age 79, unknown 54.0
2392 Female, age 94, both hemispheres 49.2
Globus pallidus, externus
nTPM: 56.3
2646 Male, age 61, right hemisphere 60.2
2772 Female, age 79, unknown 59.5
1996 Male, age 80, right hemisphere 59.4
2395 Male, age 75, both hemispheres 52.8
2567 Female, age 72, unknown 49.3
Globus pallidus, internus
nTPM: 56.7
2287 Male, age 75, right hemisphere 60.9
2778 Female, age 91, both hemispheres 60.7
1818 Male, age 74, unknown 58.0
2037 Male, age 80, right hemisphere 55.4
2111 Female, age 85, right hemisphere 55.1
2483 Female, age 94, right hemisphere 54.6
2566 Female, age 72, unknown 51.9
Nucleus accumbens
nTPM: 53.0
2286 Male, age 75, left hemisphere 57.2
1806 Female, age 85, left hemisphere 53.7
1783 Male, age 74, unknown 53.3
1856 Female, age 91, right hemisphere 53.3
2391 Female, age 94, left hemisphere 52.8
2732 Male, age 80, right hemisphere 52.2
2698 Female, age 72, unknown 50.9
2824 Male, age 61, right hemisphere 50.9
Nucleus basalis of Meynert
nTPM: 53.1
2569 Male, age 61, both hemispheres 59.5
2484 Female, age 94, left hemisphere 53.0
2821 Male, age 75, both hemispheres 50.8
2393 Male, age 80, right hemisphere 49.0
Nucleus of the diagonal band
nTPM: 56.6
2775 Male, age 80, right hemisphere 57.9
2195 Female, age 85, both hemispheres 57.6
2029 Male, age 61, right hemisphere 57.0
1812 Female, age 91, both hemispheres 56.6
1979 Male, age 74, unknown 53.7
Olfactory tubercle
nTPM: 55.6
2487 Female, age 94, left hemisphere 58.2
1998 Female, age 91, both hemispheres 56.7
1846 Male, age 80, right hemisphere 54.9
2856 Male, age 75, right hemisphere 52.5
Putamen
nTPM: 51.7
2482 Female, age 94, left hemisphere 53.7
2647 Male, age 75, left hemisphere 53.7
2466 Female, age 79, unknown 53.0
1838 Male, age 80, right hemisphere 51.0
1937 Female, age 91, right hemisphere 51.0
2489 Female, age 72, unknown 50.1
1829 Male, age 74, unknown 49.5
Septal nuclei
nTPM: 56.5
1960 Male, age 74, unknown 63.4
2031 Female, age 72, unknown 56.7
2059 Female, age 85, both hemispheres 55.7
2394 Male, age 61, left hemisphere 55.5
2629 Female, age 94, right hemisphere 55.2
2009 Female, age 91, both hemispheres 54.7
2199 Male, age 80, right hemisphere 54.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 73.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.0
Samples: 246

Max nTPM: 131.5
Min nTPM: 30.9
Std nTPM: 13.9
Median nTPM: 64.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 131.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 124.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 115.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 109.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 107.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 102.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 100.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 97.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 96.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 95.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 95.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 70.5
Samples: 246

Max nTPM: 170.6
Min nTPM: 36.3
Std nTPM: 20.1
Median nTPM: 65.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 170.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 148.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 142.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 136.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 127.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 118.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 115.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 114.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 111.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 111.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 110.1
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Brain - Putamen (basal ganglia)
Average nTPM: 73.6
Samples: 205

Max nTPM: 118.8
Min nTPM: 39.5
Std nTPM: 14.5
Median nTPM: 70.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 118.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 114.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 108.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 106.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 106.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 104.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 104.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 101.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 101.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 99.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 98.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.1
FF:10164-103B2 76 years, female 49.1
Globus pallidus
Scaled Tags Per Million: 35.8
FF:10161-103A8 76 years, female 48.0
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 64.4
FF:10037-101F1 23-56 years, mixed 64.4
Putamen
Scaled Tags Per Million: 47.2
FF:10176-103C5 60 years, female 47.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.1
Pig sample Sample description nTPM
Caudate
nTPM: 40.7
Samples: 4

Max nTPM: 48.4
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 43.4
Sample C Male 48.4
Sample D Male 38.2
Putamen
nTPM: 45.1
Samples: 4

Max nTPM: 50.8
Min nTPM: 38.5
Sample A Female 42.8
Sample B Female 38.5
Sample C Male 50.8
Sample D Male 48.1
Septum
nTPM: 37.3
Samples: 4

Max nTPM: 41.9
Min nTPM: 33.5
Sample A Female 37.9
Sample B Female 35.7
Sample C Male 41.9
Sample D Male 33.5
Ventral pallidum
nTPM: 42.1
Samples: 4

Max nTPM: 53.6
Min nTPM: 32.1
Sample A Female 32.1
Sample B Female 43.6
Sample C Male 53.6
Sample D Male 39.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 143.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 143.1
Samples: 4

Max nTPM: 149.8
Min nTPM: 135.4
Sample A Male 135.4
Sample B Male 149.8
Sample C Female 140.3
Sample D Female 146.9
Septum
nTPM: 137.9
Samples: 4

Max nTPM: 142.1
Min nTPM: 133.9
Sample A Male 139.0
Sample B Male 142.1
Sample C Female 136.4
Sample D Female 133.9
Ventral forebrain
nTPM: 141.1
Samples: 4

Max nTPM: 149.7
Min nTPM: 132.1
Sample A Male 132.1
Sample B Male 142.2
Sample C Female 149.7
Sample D Female 140.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.6
67978711 Antisense, RP_040923_01_F07, Mouse strain C57BL/6J (56 days, male) 3.6
Pallidum
Expression energy: 4.3
67978711 Antisense, RP_040923_01_F07, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

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