MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.2 nTPM
HPA:59.2 nTPM
GTEx:77.0 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:50.9 nTPM
Mouse:125.6 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.6
2586 Male, age 75, left hemisphere 59.4
2219 Male, age 76, both hemispheres 56.4
2411 Female, age 72, unknown 56.4
1827 Male, age 72, unknown 56.2
2828 Female, age 72, unknown 56.1
2019 Male, age 18, unknown 54.0
1870 Female, age 42, unknown 53.6
1833 Male, age 53, unknown 53.1
1830 Male, age 51, unknown 52.4
2666 Male, age 74, left hemisphere 48.7
Dorsal raphe nucleus
nTPM: 56.9
2298 Female, age 72, unknown 63.5
2047 Male, age 72, unknown 57.7
2750 Male, age 76, both hemispheres 57.1
1828 Male, age 53, unknown 55.5
2016 Female, age 72, unknown 50.8
Inferior colliculus
nTPM: 51.4
2097 Female, age 72, unknown 52.7
1848 Female, age 42, unknown 51.4
1890 Male, age 53, unknown 50.8
2849 Male, age 72, unknown 50.5
Median raphe nucleus
nTPM: 57.7
2220 Male, age 76, midline 57.7
Pedunculopontine tegmental nucleus
nTPM: 54.3
2334 Male, age 80, both hemispheres 57.8
1921 Female, age 85, both hemispheres 54.3
2338 Male, age 61, both hemispheres 50.8
Periaquaductal grey, anterior
nTPM: 56.1
1947 Male, age 18, unknown 57.0
1795 Male, age 51, unknown 55.9
2502 Female, age 75, unknown 55.5
Periaquaductal grey, dorsal
nTPM: 51.8
1840 Male, age 53, unknown 53.6
2850 Male, age 76, both hemispheres 52.4
1831 Male, age 72, unknown 51.6
2464 Female, age 72, unknown 49.5
Periaquaductal grey, lateral
nTPM: 53.1
2272 Male, age 74, both hemispheres 58.2
2053 Male, age 18, unknown 50.7
2140 Male, age 76, both hemispheres 50.6
Pretectal area
nTPM: 55.4
2667 Female, age 75, unknown 59.5
1944 Female, age 72, unknown 58.5
2007 Male, age 72, unknown 58.3
1816 Male, age 51, unknown 57.7
2273 Male, age 74, both hemispheres 56.9
1817 Female, age 42, unknown 56.4
2224 Female, age 72, unknown 56.0
1815 Male, age 53, unknown 55.2
2407 Male, age 75, both hemispheres 51.1
2825 Male, age 18, unknown 51.1
2316 Male, age 76, right hemisphere 49.2
Red nucleus
nTPM: 54.0
1821 Female, age 72, unknown 56.0
1904 Male, age 53, unknown 56.0
2588 Male, age 74, left hemisphere 55.9
2785 Male, age 18, unknown 55.9
1865 Male, age 51, unknown 54.7
2227 Male, age 72, unknown 54.4
2769 Male, age 72, unknown 54.2
2725 Female, age 75, unknown 53.9
2503 Female, age 72, unknown 53.5
1954 Female, age 42, unknown 52.5
2584 Male, age 75, left hemisphere 51.1
2823 Male, age 76, right hemisphere 50.2
Substantia nigra
nTPM: 59.2
1916 Female, age 42, unknown 72.2
1851 Male, age 51, unknown 66.2
2699 Male, age 18, unknown 61.8
1941 Male, age 53, unknown 57.5
1889 Female, age 72, unknown 57.1
2409 Female, age 72, unknown 56.0
2241 Male, age 72, unknown 55.7
2583 Male, age 75, right hemisphere 55.5
2590 Female, age 75, unknown 55.3
2665 Male, age 74, both hemispheres 54.8
Superior colliculus
nTPM: 54.3
1796 Male, age 53, unknown 58.7
2261 Male, age 18, unknown 56.4
2087 Female, age 72, unknown 56.1
2668 Female, age 75, unknown 54.3
1913 Female, age 42, unknown 54.0
2587 Male, age 74, left hemisphere 54.0
2664 Male, age 75, both hemispheres 53.8
1995 Male, age 72, unknown 52.4
1895 Male, age 76, right hemisphere 51.9
1839 Male, age 51, unknown 51.6
Ventral tegmental area
nTPM: 59.0
2410 Female, age 72, unknown 65.4
1915 Female, age 42, unknown 62.3
2218 Male, age 76, both hemispheres 61.8
2223 Female, age 72, unknown 55.0
1942 Male, age 51, unknown 54.8
2021 Male, age 53, unknown 54.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.0
Samples: 139

Max nTPM: 158.3
Min nTPM: 39.5
Std nTPM: 19.3
Median nTPM: 73.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 158.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 149.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 127.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 125.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 116.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 114.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 109.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 107.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 105.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 105.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 105.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.9
FF:10158-103A5 76 years, female 45.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.9
Pig sample Sample description nTPM
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 58.5
Min nTPM: 43.9
Sample A Female 58.5
Sample B Female 44.4
Sample C Male 55.4
Sample D Male 43.9
Periaqueductal gray
nTPM: 39.8
Samples: 3

Max nTPM: 45.1
Min nTPM: 34.3
Sample B Female 40.0
Sample C Male 45.1
Sample D Male 34.3
Substantia nigra
nTPM: 50.9
Samples: 4

Max nTPM: 59.2
Min nTPM: 41.6
Sample A Female 59.0
Sample B Female 41.6
Sample C Male 59.2
Sample D Male 43.7
Superior colliculi
nTPM: 50.8
Samples: 4

Max nTPM: 57.3
Min nTPM: 43.0
Sample A Female 53.7
Sample B Female 43.0
Sample C Male 57.3
Sample D Male 49.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.6
Samples: 4

Max nTPM: 129.9
Min nTPM: 122.1
Sample A Male 127.6
Sample B Male 122.1
Sample C Female 122.8
Sample D Female 129.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
67978711 Antisense, RP_040923_01_F07, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.