MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.0 nTPM
HPA:77.0 nTPM
GTEx:78.3 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:52.2 nTPM
Mouse:100.3 nTPM
Allen mouse:17.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.1
2019 Male, age 18, unknown 81.5
2666 Male, age 74, left hemisphere 69.4
1827 Male, age 72, unknown 68.1
2411 Female, age 72, unknown 67.6
1833 Male, age 53, unknown 66.2
2219 Male, age 76, both hemispheres 65.9
2586 Male, age 75, left hemisphere 65.3
1870 Female, age 42, unknown 64.6
1830 Male, age 51, unknown 62.3
2828 Female, age 72, unknown 60.1
Dorsal raphe nucleus
nTPM: 64.7
1828 Male, age 53, unknown 70.4
2298 Female, age 72, unknown 69.1
2016 Female, age 72, unknown 63.4
2750 Male, age 76, both hemispheres 60.9
2047 Male, age 72, unknown 59.6
Inferior colliculus
nTPM: 74.6
2097 Female, age 72, unknown 80.1
1890 Male, age 53, unknown 75.7
1848 Female, age 42, unknown 73.4
2849 Male, age 72, unknown 69.3
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Pedunculopontine tegmental nucleus
nTPM: 69.6
1921 Female, age 85, both hemispheres 70.7
2338 Male, age 61, both hemispheres 69.3
2334 Male, age 80, both hemispheres 68.8
Periaquaductal grey, anterior
nTPM: 68.5
1947 Male, age 18, unknown 70.4
2502 Female, age 75, unknown 70.0
1795 Male, age 51, unknown 65.2
Periaquaductal grey, dorsal
nTPM: 64.1
1840 Male, age 53, unknown 68.7
1831 Male, age 72, unknown 63.6
2464 Female, age 72, unknown 62.4
2850 Male, age 76, both hemispheres 61.6
Periaquaductal grey, lateral
nTPM: 62.0
2053 Male, age 18, unknown 62.8
2272 Male, age 74, both hemispheres 62.5
2140 Male, age 76, both hemispheres 60.7
Pretectal area
nTPM: 77.0
1944 Female, age 72, unknown 95.3
1817 Female, age 42, unknown 95.2
1816 Male, age 51, unknown 91.5
2007 Male, age 72, unknown 91.2
1815 Male, age 53, unknown 81.7
2667 Female, age 75, unknown 72.5
2224 Female, age 72, unknown 67.1
2407 Male, age 75, both hemispheres 65.9
2316 Male, age 76, right hemisphere 65.7
2273 Male, age 74, both hemispheres 60.9
2825 Male, age 18, unknown 60.3
Red nucleus
nTPM: 68.4
1821 Female, age 72, unknown 80.6
2785 Male, age 18, unknown 77.2
2725 Female, age 75, unknown 70.4
2588 Male, age 74, left hemisphere 67.8
2503 Female, age 72, unknown 67.5
1865 Male, age 51, unknown 66.6
2227 Male, age 72, unknown 66.4
2584 Male, age 75, left hemisphere 66.3
2823 Male, age 76, right hemisphere 65.7
2769 Male, age 72, unknown 65.3
1954 Female, age 42, unknown 64.9
1904 Male, age 53, unknown 61.4
Substantia nigra
nTPM: 75.9
2241 Male, age 72, unknown 87.2
1889 Female, age 72, unknown 86.0
1916 Female, age 42, unknown 81.5
1941 Male, age 53, unknown 78.2
1851 Male, age 51, unknown 77.5
2665 Male, age 74, both hemispheres 74.3
2409 Female, age 72, unknown 73.4
2590 Female, age 75, unknown 69.2
2583 Male, age 75, right hemisphere 67.4
2699 Male, age 18, unknown 64.4
Superior colliculus
nTPM: 70.4
2087 Female, age 72, unknown 83.7
1895 Male, age 76, right hemisphere 75.9
2668 Female, age 75, unknown 73.6
2261 Male, age 18, unknown 71.9
1913 Female, age 42, unknown 68.4
1839 Male, age 51, unknown 68.1
1796 Male, age 53, unknown 67.2
2664 Male, age 75, both hemispheres 66.3
2587 Male, age 74, left hemisphere 64.9
1995 Male, age 72, unknown 64.3
Ventral tegmental area
nTPM: 67.7
2410 Female, age 72, unknown 73.8
2218 Male, age 76, both hemispheres 73.5
1915 Female, age 42, unknown 71.5
1942 Male, age 51, unknown 65.7
2223 Female, age 72, unknown 62.3
2021 Male, age 53, unknown 59.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.3
Samples: 139

Max nTPM: 192.6
Min nTPM: 30.9
Std nTPM: 29.1
Median nTPM: 69.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 192.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 176.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 170.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 162.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 154.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 152.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 148.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 142.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 135.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 130.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 128.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.2
Pig sample Sample description nTPM
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 56.1
Min nTPM: 42.2
Sample A Female 42.2
Sample B Female 47.6
Sample C Male 51.6
Sample D Male 56.1
Periaqueductal gray
nTPM: 40.5
Samples: 3

Max nTPM: 41.8
Min nTPM: 39.3
Sample B Female 41.8
Sample C Male 40.3
Sample D Male 39.3
Substantia nigra
nTPM: 41.3
Samples: 4

Max nTPM: 50.6
Min nTPM: 35.4
Sample A Female 50.6
Sample B Female 35.4
Sample C Male 40.8
Sample D Male 38.4
Superior colliculi
nTPM: 52.2
Samples: 4

Max nTPM: 63.5
Min nTPM: 34.9
Sample A Female 63.5
Sample B Female 34.9
Sample C Male 56.6
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 100.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.3
Samples: 4

Max nTPM: 104.1
Min nTPM: 94.5
Sample A Male 104.1
Sample B Male 101.3
Sample C Female 94.5
Sample D Female 101.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
2705 Antisense, RP_040604_02_A10, Mouse strain C57BL/6J (56 days, male) 17.7
2706 Antisense, RP_040604_02_A10, Mouse strain C57BL/6J (56 days, male) 9.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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