BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:29.6 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:18.0 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA052569
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.9
2481 Female, age 94, left hemisphere 15.4
1854 Male, age 80, left hemisphere 15.3
2288 Male, age 75, left hemisphere 15.1
2290 Female, age 72, unknown 15.1
1857 Female, age 85, left hemisphere 14.8
2846 Female, age 79, unknown 14.8
2289 Male, age 61, right hemisphere 14.6
1781 Male, age 74, unknown 14.4
Claustrum
nTPM: 14.9
2198 Male, age 80, both hemispheres 15.3
2491 Male, age 75, both hemispheres 15.3
2292 Female, age 85, both hemispheres 15.1
2568 Male, age 61, both hemispheres 15.0
1956 Male, age 74, unknown 14.9
2196 Female, age 79, unknown 14.9
2392 Female, age 94, both hemispheres 14.8
2284 Female, age 91, both hemispheres 14.5
2645 Female, age 72, unknown 14.5
Globus pallidus, externus
nTPM: 16.5
2772 Female, age 79, unknown 17.6
1996 Male, age 80, right hemisphere 17.0
2567 Female, age 72, unknown 16.5
2395 Male, age 75, both hemispheres 15.7
2646 Male, age 61, right hemisphere 15.6
Globus pallidus, internus
nTPM: 16.5
2287 Male, age 75, right hemisphere 17.4
2778 Female, age 91, both hemispheres 16.9
1818 Male, age 74, unknown 16.7
2111 Female, age 85, right hemisphere 16.5
2037 Male, age 80, right hemisphere 16.3
2483 Female, age 94, right hemisphere 15.9
2566 Female, age 72, unknown 15.9
Nucleus accumbens
nTPM: 15.3
1856 Female, age 91, right hemisphere 16.3
2732 Male, age 80, right hemisphere 15.5
1806 Female, age 85, left hemisphere 15.4
2286 Male, age 75, left hemisphere 15.4
2824 Male, age 61, right hemisphere 15.4
2698 Female, age 72, unknown 15.1
1783 Male, age 74, unknown 15.0
2391 Female, age 94, left hemisphere 14.6
Nucleus basalis of Meynert
nTPM: 14.9
2569 Male, age 61, both hemispheres 15.1
2393 Male, age 80, right hemisphere 15.0
2484 Female, age 94, left hemisphere 14.8
2821 Male, age 75, both hemispheres 14.7
Nucleus of the diagonal band
nTPM: 15.2
2775 Male, age 80, right hemisphere 16.0
1812 Female, age 91, both hemispheres 15.5
2029 Male, age 61, right hemisphere 15.3
2195 Female, age 85, both hemispheres 14.7
1979 Male, age 74, unknown 14.5
Olfactory tubercle
nTPM: 14.8
1846 Male, age 80, right hemisphere 15.3
1998 Female, age 91, both hemispheres 15.3
2487 Female, age 94, left hemisphere 14.9
2856 Male, age 75, right hemisphere 13.9
Putamen
nTPM: 14.9
1937 Female, age 91, right hemisphere 15.2
1838 Male, age 80, right hemisphere 15.1
2482 Female, age 94, left hemisphere 15.0
2647 Male, age 75, left hemisphere 15.0
2466 Female, age 79, unknown 14.9
2489 Female, age 72, unknown 14.7
1829 Male, age 74, unknown 14.3
Septal nuclei
nTPM: 14.9
1960 Male, age 74, unknown 15.5
2031 Female, age 72, unknown 15.5
2394 Male, age 61, left hemisphere 15.1
2199 Male, age 80, right hemisphere 14.9
2059 Female, age 85, both hemispheres 14.8
2009 Female, age 91, both hemispheres 14.5
2629 Female, age 94, right hemisphere 14.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.3
Samples: 246

Max nTPM: 41.9
Min nTPM: 12.6
Std nTPM: 5.6
Median nTPM: 25.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 41.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 41.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 41.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 40.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 39.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 39.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 38.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 38.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 38.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 37.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.6
Samples: 246

Max nTPM: 51.6
Min nTPM: 10.9
Std nTPM: 6.7
Median nTPM: 28.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 51.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 49.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 49.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 48.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 47.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 44.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 44.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 44.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 43.9
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 43.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 43.0
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Brain - Putamen (basal ganglia)
Average nTPM: 28.8
Samples: 205

Max nTPM: 53.0
Min nTPM: 13.8
Std nTPM: 5.9
Median nTPM: 28.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 53.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 46.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 42.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 41.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 40.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 40.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 39.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 39.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 39.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 39.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.3
FF:10164-103B2 76 years, female 35.3
Globus pallidus
Scaled Tags Per Million: 66.3
FF:10175-103C4 60 years, female 93.9
FF:10161-103A8 76 years, female 38.8
Nucleus accumbens
Scaled Tags Per Million: 30.5
FF:10037-101F1 23-56 years, mixed 30.5
Putamen
Scaled Tags Per Million: 47.8
FF:10176-103C5 60 years, female 47.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Caudate
nTPM: 7.3
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.2
Sample A Female 7.5
Sample B Female 7.6
Sample C Male 6.2
Sample D Male 7.7
Putamen
nTPM: 6.3
Samples: 4

Max nTPM: 7.7
Min nTPM: 4.1
Sample A Female 7.1
Sample B Female 7.7
Sample C Male 4.1
Sample D Male 6.4
Septum
nTPM: 6.4
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.1
Sample A Female 6.7
Sample B Female 7.2
Sample C Male 5.1
Sample D Male 6.7
Ventral pallidum
nTPM: 6.8
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.5
Sample A Female 8.1
Sample B Female 6.8
Sample C Male 5.5
Sample D Male 6.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.8
Samples: 4

Max nTPM: 20.6
Min nTPM: 14.1
Sample A Male 19.2
Sample B Male 17.1
Sample C Female 20.6
Sample D Female 14.1
Septum
nTPM: 11.0
Samples: 4

Max nTPM: 14.0
Min nTPM: 8.6
Sample A Male 14.0
Sample B Male 8.6
Sample C Female 11.8
Sample D Female 9.5
Ventral forebrain
nTPM: 18.0
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.7
Sample A Male 19.1
Sample B Male 15.7
Sample C Female 17.1
Sample D Female 20.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69352776 Antisense, RP_050412_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
69352776 Antisense, RP_050412_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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