MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.9 nTPM
HPA:54.9 nTPM
GTEx:42.1 nTPM
FANTOM5:301.1 Scaled Tags Per Million
Pig:54.2 nTPM
Mouse:71.1 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.5
1870 Female, age 42, unknown 49.3
2411 Female, age 72, unknown 48.4
1833 Male, age 53, unknown 47.8
1830 Male, age 51, unknown 46.0
2219 Male, age 76, both hemispheres 39.3
2828 Female, age 72, unknown 32.6
1827 Male, age 72, unknown 32.4
2019 Male, age 18, unknown 27.3
2666 Male, age 74, left hemisphere 26.7
2586 Male, age 75, left hemisphere 25.1
Dorsal raphe nucleus
nTPM: 46.1
2750 Male, age 76, both hemispheres 66.0
2047 Male, age 72, unknown 45.3
2298 Female, age 72, unknown 42.0
2016 Female, age 72, unknown 39.6
1828 Male, age 53, unknown 37.4
Inferior colliculus
nTPM: 36.1
2849 Male, age 72, unknown 43.9
1848 Female, age 42, unknown 40.0
2097 Female, age 72, unknown 32.2
1890 Male, age 53, unknown 28.3
Median raphe nucleus
nTPM: 54.9
2220 Male, age 76, midline 54.9
Pedunculopontine tegmental nucleus
nTPM: 41.2
2334 Male, age 80, both hemispheres 45.5
1921 Female, age 85, both hemispheres 40.0
2338 Male, age 61, both hemispheres 38.0
Periaquaductal grey, anterior
nTPM: 31.5
1947 Male, age 18, unknown 40.9
2502 Female, age 75, unknown 28.0
1795 Male, age 51, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 33.4
2464 Female, age 72, unknown 36.1
1840 Male, age 53, unknown 34.4
2850 Male, age 76, both hemispheres 33.0
1831 Male, age 72, unknown 30.1
Periaquaductal grey, lateral
nTPM: 30.2
2053 Male, age 18, unknown 32.4
2272 Male, age 74, both hemispheres 29.2
2140 Male, age 76, both hemispheres 28.8
Pretectal area
nTPM: 28.9
2825 Male, age 18, unknown 38.7
2224 Female, age 72, unknown 38.3
2316 Male, age 76, right hemisphere 37.5
2667 Female, age 75, unknown 33.8
2273 Male, age 74, both hemispheres 30.5
2407 Male, age 75, both hemispheres 28.5
1815 Male, age 53, unknown 27.7
1817 Female, age 42, unknown 24.8
1944 Female, age 72, unknown 19.9
2007 Male, age 72, unknown 19.6
1816 Male, age 51, unknown 17.9
Red nucleus
nTPM: 43.6
1821 Female, age 72, unknown 64.6
1865 Male, age 51, unknown 51.0
1904 Male, age 53, unknown 49.5
1954 Female, age 42, unknown 49.4
2769 Male, age 72, unknown 47.5
2227 Male, age 72, unknown 46.8
2823 Male, age 76, right hemisphere 44.6
2503 Female, age 72, unknown 40.2
2725 Female, age 75, unknown 39.0
2588 Male, age 74, left hemisphere 32.9
2785 Male, age 18, unknown 29.2
2584 Male, age 75, left hemisphere 29.0
Substantia nigra
nTPM: 36.2
2699 Male, age 18, unknown 47.3
1851 Male, age 51, unknown 40.0
2241 Male, age 72, unknown 39.7
1941 Male, age 53, unknown 39.6
2409 Female, age 72, unknown 37.3
1916 Female, age 42, unknown 35.3
1889 Female, age 72, unknown 34.4
2590 Female, age 75, unknown 31.8
2583 Male, age 75, right hemisphere 31.6
2665 Male, age 74, both hemispheres 25.2
Superior colliculus
nTPM: 33.2
1895 Male, age 76, right hemisphere 50.6
1839 Male, age 51, unknown 41.5
1913 Female, age 42, unknown 39.2
2587 Male, age 74, left hemisphere 37.3
2668 Female, age 75, unknown 34.7
1995 Male, age 72, unknown 33.5
1796 Male, age 53, unknown 28.7
2261 Male, age 18, unknown 23.4
2087 Female, age 72, unknown 21.9
2664 Male, age 75, both hemispheres 21.2
Ventral tegmental area
nTPM: 44.0
2218 Male, age 76, both hemispheres 50.8
2410 Female, age 72, unknown 46.3
2223 Female, age 72, unknown 44.5
1915 Female, age 42, unknown 42.2
2021 Male, age 53, unknown 41.8
1942 Male, age 51, unknown 38.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.1
Samples: 139

Max nTPM: 127.5
Min nTPM: 15.8
Std nTPM: 18.5
Median nTPM: 37.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 127.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 106.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 97.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 96.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 96.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 96.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 87.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 73.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 68.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 68.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 301.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 301.1
FF:10158-103A5 76 years, female 301.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.2
Pig sample Sample description nTPM
Midbrain
nTPM: 35.6
Samples: 4

Max nTPM: 46.1
Min nTPM: 21.2
Sample A Female 29.4
Sample B Female 46.1
Sample C Male 21.2
Sample D Male 45.6
Periaqueductal gray
nTPM: 40.6
Samples: 3

Max nTPM: 43.9
Min nTPM: 38.2
Sample B Female 39.7
Sample C Male 43.9
Sample D Male 38.2
Substantia nigra
nTPM: 41.3
Samples: 4

Max nTPM: 51.5
Min nTPM: 33.6
Sample A Female 45.9
Sample B Female 51.5
Sample C Male 34.2
Sample D Male 33.6
Superior colliculi
nTPM: 54.2
Samples: 4

Max nTPM: 91.3
Min nTPM: 21.2
Sample A Female 62.9
Sample B Female 91.3
Sample C Male 21.2
Sample D Male 41.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 76.4
Min nTPM: 63.7
Sample A Male 63.7
Sample B Male 74.5
Sample C Female 76.4
Sample D Female 69.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
130155 Antisense, RP_040407_01_F11, Mouse strain C57BL/6J (56 days, male) 7.7
70928271 Antisense, RP_050725_02_C06, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.