MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.0 nTPM
HPA:18.0 nTPM
GTEx:14.1 nTPM
FANTOM5:8.1 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:4.0 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.4
2666 Male, age 74, left hemisphere 19.2
1827 Male, age 72, unknown 18.0
1833 Male, age 53, unknown 17.9
1830 Male, age 51, unknown 17.6
2019 Male, age 18, unknown 17.3
2219 Male, age 76, both hemispheres 17.2
2828 Female, age 72, unknown 17.1
2411 Female, age 72, unknown 17.0
1870 Female, age 42, unknown 16.8
2586 Male, age 75, left hemisphere 15.8
Dorsal raphe nucleus
nTPM: 16.8
1828 Male, age 53, unknown 17.4
2016 Female, age 72, unknown 17.1
2298 Female, age 72, unknown 17.0
2750 Male, age 76, both hemispheres 16.4
2047 Male, age 72, unknown 16.3
Inferior colliculus
nTPM: 18.0
1848 Female, age 42, unknown 18.7
2849 Male, age 72, unknown 18.1
2097 Female, age 72, unknown 17.9
1890 Male, age 53, unknown 17.3
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Pedunculopontine tegmental nucleus
nTPM: 17.0
2338 Male, age 61, both hemispheres 17.2
1921 Female, age 85, both hemispheres 17.1
2334 Male, age 80, both hemispheres 16.6
Periaquaductal grey, anterior
nTPM: 16.8
1947 Male, age 18, unknown 17.6
2502 Female, age 75, unknown 16.6
1795 Male, age 51, unknown 16.3
Periaquaductal grey, dorsal
nTPM: 17.1
1840 Male, age 53, unknown 17.4
1831 Male, age 72, unknown 17.3
2850 Male, age 76, both hemispheres 17.0
2464 Female, age 72, unknown 16.7
Periaquaductal grey, lateral
nTPM: 17.6
2140 Male, age 76, both hemispheres 17.8
2272 Male, age 74, both hemispheres 17.6
2053 Male, age 18, unknown 17.4
Pretectal area
nTPM: 17.6
1817 Female, age 42, unknown 19.0
2316 Male, age 76, right hemisphere 18.4
1815 Male, age 53, unknown 18.0
1816 Male, age 51, unknown 18.0
2007 Male, age 72, unknown 17.8
1944 Female, age 72, unknown 17.6
2224 Female, age 72, unknown 17.2
2407 Male, age 75, both hemispheres 17.2
2667 Female, age 75, unknown 17.2
2825 Male, age 18, unknown 17.0
2273 Male, age 74, both hemispheres 16.6
Red nucleus
nTPM: 17.3
2588 Male, age 74, left hemisphere 18.9
2823 Male, age 76, right hemisphere 18.2
1904 Male, age 53, unknown 18.1
2503 Female, age 72, unknown 17.4
1821 Female, age 72, unknown 17.3
2725 Female, age 75, unknown 17.0
2769 Male, age 72, unknown 17.0
1865 Male, age 51, unknown 16.9
2785 Male, age 18, unknown 16.9
1954 Female, age 42, unknown 16.7
2584 Male, age 75, left hemisphere 16.7
2227 Male, age 72, unknown 16.6
Substantia nigra
nTPM: 17.1
2583 Male, age 75, right hemisphere 18.5
2590 Female, age 75, unknown 18.4
2409 Female, age 72, unknown 17.8
1851 Male, age 51, unknown 17.1
1889 Female, age 72, unknown 16.9
2241 Male, age 72, unknown 16.9
2699 Male, age 18, unknown 16.9
2665 Male, age 74, both hemispheres 16.7
1916 Female, age 42, unknown 16.0
1941 Male, age 53, unknown 15.8
Superior colliculus
nTPM: 17.5
1913 Female, age 42, unknown 18.6
1995 Male, age 72, unknown 18.2
2261 Male, age 18, unknown 18.1
1895 Male, age 76, right hemisphere 18.0
1796 Male, age 53, unknown 17.6
2087 Female, age 72, unknown 17.5
1839 Male, age 51, unknown 17.1
2668 Female, age 75, unknown 17.1
2664 Male, age 75, both hemispheres 16.5
2587 Male, age 74, left hemisphere 16.1
Ventral tegmental area
nTPM: 17.3
2410 Female, age 72, unknown 18.7
1942 Male, age 51, unknown 18.0
2223 Female, age 72, unknown 17.2
2218 Male, age 76, both hemispheres 16.8
2021 Male, age 53, unknown 16.6
1915 Female, age 42, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 30.4
Min nTPM: 6.2
Std nTPM: 3.6
Median nTPM: 13.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 30.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 26.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 22.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 20.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 20.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 20.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 19.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 19.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 19.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 19.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.1
FF:10158-103A5 76 years, female 8.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.1
Sample A Female 6.1
Sample B Female 4.8
Sample C Male 4.1
Sample D Male 4.5
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.1
Min nTPM: 4.5
Sample B Female 4.5
Sample C Male 5.1
Sample D Male 4.8
Substantia nigra
nTPM: 5.4
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 4.9
Sample C Male 5.0
Sample D Male 6.7
Superior colliculi
nTPM: 4.9
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.1
Sample A Female 5.1
Sample B Female 4.6
Sample C Male 4.1
Sample D Male 5.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.7
Sample A Male 4.6
Sample B Male 3.7
Sample C Female 3.8
Sample D Female 4.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68862102 Antisense, RP_050301_01_E08, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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