BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:3.0 nTPM
FANTOM5:14.8 Scaled Tags Per Million
Pig:19.5 nTPM
Mouse:16.3 nTPM
Allen mouse:4.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.3
1781 Male, age 74, unknown 3.0
2288 Male, age 75, left hemisphere 3.0
2289 Male, age 61, right hemisphere 2.2
2481 Female, age 94, left hemisphere 2.2
1854 Male, age 80, left hemisphere 2.0
2290 Female, age 72, unknown 1.9
2846 Female, age 79, unknown 1.9
1857 Female, age 85, left hemisphere 1.8
Claustrum
nTPM: 2.8
2568 Male, age 61, both hemispheres 3.4
2284 Female, age 91, both hemispheres 3.2
2491 Male, age 75, both hemispheres 3.1
2392 Female, age 94, both hemispheres 3.0
2198 Male, age 80, both hemispheres 2.8
2645 Female, age 72, unknown 2.8
1956 Male, age 74, unknown 2.3
2292 Female, age 85, both hemispheres 2.3
2196 Female, age 79, unknown 2.2
Globus pallidus, externus
nTPM: 3.2
2772 Female, age 79, unknown 5.5
2567 Female, age 72, unknown 3.1
2395 Male, age 75, both hemispheres 2.7
2646 Male, age 61, right hemisphere 2.4
1996 Male, age 80, right hemisphere 2.2
Globus pallidus, internus
nTPM: 2.8
1818 Male, age 74, unknown 4.4
2037 Male, age 80, right hemisphere 2.9
2111 Female, age 85, right hemisphere 2.7
2566 Female, age 72, unknown 2.5
2287 Male, age 75, right hemisphere 2.4
2483 Female, age 94, right hemisphere 2.4
2778 Female, age 91, both hemispheres 2.4
Nucleus accumbens
nTPM: 2.3
2286 Male, age 75, left hemisphere 2.6
2391 Female, age 94, left hemisphere 2.4
2732 Male, age 80, right hemisphere 2.4
1856 Female, age 91, right hemisphere 2.3
2824 Male, age 61, right hemisphere 2.2
1783 Male, age 74, unknown 2.1
2698 Female, age 72, unknown 2.0
1806 Female, age 85, left hemisphere 1.8
Nucleus basalis of Meynert
nTPM: 2.4
2821 Male, age 75, both hemispheres 2.6
2484 Female, age 94, left hemisphere 2.5
2393 Male, age 80, right hemisphere 2.2
2569 Male, age 61, both hemispheres 2.2
Nucleus of the diagonal band
nTPM: 3.1
2029 Male, age 61, right hemisphere 3.3
1979 Male, age 74, unknown 3.1
2775 Male, age 80, right hemisphere 3.1
2195 Female, age 85, both hemispheres 3.0
1812 Female, age 91, both hemispheres 2.8
Olfactory tubercle
nTPM: 3.9
2856 Male, age 75, right hemisphere 4.7
1998 Female, age 91, both hemispheres 3.7
2487 Female, age 94, left hemisphere 3.7
1846 Male, age 80, right hemisphere 3.3
Putamen
nTPM: 2.3
1829 Male, age 74, unknown 2.7
2647 Male, age 75, left hemisphere 2.4
2482 Female, age 94, left hemisphere 2.3
2489 Female, age 72, unknown 2.3
1937 Female, age 91, right hemisphere 2.2
2466 Female, age 79, unknown 2.1
1838 Male, age 80, right hemisphere 1.8
Septal nuclei
nTPM: 2.9
2629 Female, age 94, right hemisphere 3.2
2009 Female, age 91, both hemispheres 3.1
2199 Male, age 80, right hemisphere 3.0
2031 Female, age 72, unknown 2.7
2059 Female, age 85, both hemispheres 2.7
2394 Male, age 61, left hemisphere 2.7
1960 Male, age 74, unknown 2.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.9
Samples: 246

Max nTPM: 13.9
Min nTPM: 0.7
Std nTPM: 1.3
Median nTPM: 2.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 13.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 7.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 6.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 6.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 6.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 6.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 6.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 5.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 5.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 5.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 5.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.8
Samples: 246

Max nTPM: 14.7
Min nTPM: 0.6
Std nTPM: 1.5
Median nTPM: 2.4
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 14.7
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 13.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 7.5
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 7.4
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 7.3
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 6.6
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 6.5
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 5.8
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 5.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 5.7
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 5.7
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Brain - Putamen (basal ganglia)
Average nTPM: 3.0
Samples: 205

Max nTPM: 7.3
Min nTPM: 1.0
Std nTPM: 1.1
Median nTPM: 2.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 7.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 6.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 6.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 5.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 5.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 5.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 5.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 5.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 5.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 5.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.2
FF:10164-103B2 76 years, female 8.2
Globus pallidus
Scaled Tags Per Million: 10.5
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 9.2
Nucleus accumbens
Scaled Tags Per Million: 14.8
FF:10037-101F1 23-56 years, mixed 14.8
Putamen
Scaled Tags Per Million: 5.0
FF:10176-103C5 60 years, female 5.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.5
Pig sample Sample description nTPM
Caudate
nTPM: 16.7
Samples: 4

Max nTPM: 20.6
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 17.3
Sample C Male 20.6
Sample D Male 14.9
Putamen
nTPM: 19.5
Samples: 4

Max nTPM: 25.1
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 16.1
Sample C Male 25.1
Sample D Male 20.8
Septum
nTPM: 14.4
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.5
Sample A Female 14.2
Sample B Female 14.4
Sample C Male 13.5
Sample D Male 15.4
Ventral pallidum
nTPM: 16.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.0
Sample A Female 13.0
Sample B Female 17.6
Sample C Male 18.6
Sample D Male 14.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.0
Samples: 4

Max nTPM: 7.8
Min nTPM: 2.3
Sample A Male 7.8
Sample B Male 5.4
Sample C Female 4.6
Sample D Female 2.3
Septum
nTPM: 5.4
Samples: 4

Max nTPM: 9.3
Min nTPM: 3.5
Sample A Male 9.3
Sample B Male 3.9
Sample C Female 3.5
Sample D Female 4.9
Ventral forebrain
nTPM: 16.3
Samples: 4

Max nTPM: 22.8
Min nTPM: 13.1
Sample A Male 22.8
Sample B Male 13.8
Sample C Female 13.1
Sample D Female 15.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
71608196 Antisense, RP_050927_01_A02, Mouse strain C57BL/6J (56 days, male) 1.9
73817925 Antisense, RP_050927_01_A02, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 4.3
71608196 Antisense, RP_050927_01_A02, Mouse strain C57BL/6J (56 days, male) 4.3
73817925 Antisense, RP_050927_01_A02, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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