MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:82.1 nTPM
HPA:82.1 nTPM
GTEx:108.5 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:127.4 nTPM
Mouse:390.2 nTPM
Allen mouse:29.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.1
2219 Male, age 76, both hemispheres 57.9
1827 Male, age 72, unknown 54.0
2411 Female, age 72, unknown 48.0
1870 Female, age 42, unknown 47.0
1833 Male, age 53, unknown 46.1
2666 Male, age 74, left hemisphere 39.8
1830 Male, age 51, unknown 33.4
2828 Female, age 72, unknown 30.2
2586 Male, age 75, left hemisphere 26.4
2019 Male, age 18, unknown 18.7
Dorsal raphe nucleus
nTPM: 50.5
2298 Female, age 72, unknown 80.1
2750 Male, age 76, both hemispheres 58.3
2047 Male, age 72, unknown 53.9
2016 Female, age 72, unknown 30.8
1828 Male, age 53, unknown 29.2
Inferior colliculus
nTPM: 56.6
2097 Female, age 72, unknown 71.3
2849 Male, age 72, unknown 56.1
1848 Female, age 42, unknown 51.4
1890 Male, age 53, unknown 47.5
Median raphe nucleus
nTPM: 82.1
2220 Male, age 76, midline 82.1
Pedunculopontine tegmental nucleus
nTPM: 52.1
1921 Female, age 85, both hemispheres 77.5
2334 Male, age 80, both hemispheres 54.4
2338 Male, age 61, both hemispheres 24.3
Periaquaductal grey, anterior
nTPM: 75.4
2502 Female, age 75, unknown 104.9
1795 Male, age 51, unknown 63.0
1947 Male, age 18, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 63.1
1840 Male, age 53, unknown 84.0
1831 Male, age 72, unknown 68.9
2850 Male, age 76, both hemispheres 54.4
2464 Female, age 72, unknown 45.1
Periaquaductal grey, lateral
nTPM: 49.0
2053 Male, age 18, unknown 68.5
2140 Male, age 76, both hemispheres 51.6
2272 Male, age 74, both hemispheres 27.0
Pretectal area
nTPM: 64.9
2667 Female, age 75, unknown 126.8
1944 Female, age 72, unknown 100.9
1816 Male, age 51, unknown 93.8
2224 Female, age 72, unknown 82.0
2825 Male, age 18, unknown 71.6
1817 Female, age 42, unknown 52.6
1815 Male, age 53, unknown 51.8
2316 Male, age 76, right hemisphere 46.3
2407 Male, age 75, both hemispheres 38.6
2007 Male, age 72, unknown 30.6
2273 Male, age 74, both hemispheres 18.6
Red nucleus
nTPM: 25.2
2584 Male, age 75, left hemisphere 36.3
1821 Female, age 72, unknown 32.2
1954 Female, age 42, unknown 31.1
2503 Female, age 72, unknown 28.0
2769 Male, age 72, unknown 27.7
2227 Male, age 72, unknown 25.9
1904 Male, age 53, unknown 25.1
2588 Male, age 74, left hemisphere 24.5
2823 Male, age 76, right hemisphere 20.7
2725 Female, age 75, unknown 17.8
1865 Male, age 51, unknown 16.6
2785 Male, age 18, unknown 16.0
Substantia nigra
nTPM: 52.5
1916 Female, age 42, unknown 81.1
2665 Male, age 74, both hemispheres 70.2
2241 Male, age 72, unknown 61.8
1851 Male, age 51, unknown 59.1
1889 Female, age 72, unknown 56.0
2699 Male, age 18, unknown 52.3
1941 Male, age 53, unknown 50.5
2409 Female, age 72, unknown 49.6
2583 Male, age 75, right hemisphere 23.7
2590 Female, age 75, unknown 20.2
Superior colliculus
nTPM: 50.8
2087 Female, age 72, unknown 83.1
2261 Male, age 18, unknown 80.3
1796 Male, age 53, unknown 57.9
1895 Male, age 76, right hemisphere 57.6
1839 Male, age 51, unknown 49.7
2668 Female, age 75, unknown 40.6
1913 Female, age 42, unknown 37.0
1995 Male, age 72, unknown 34.9
2664 Male, age 75, both hemispheres 34.9
2587 Male, age 74, left hemisphere 32.4
Ventral tegmental area
nTPM: 59.9
2218 Male, age 76, both hemispheres 78.6
2410 Female, age 72, unknown 68.6
1915 Female, age 42, unknown 64.6
2021 Male, age 53, unknown 60.3
1942 Male, age 51, unknown 52.5
2223 Female, age 72, unknown 35.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.5
Samples: 139

Max nTPM: 302.7
Min nTPM: 7.5
Std nTPM: 68.2
Median nTPM: 98.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 302.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 300.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 291.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 260.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 245.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 241.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 233.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 231.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 231.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 223.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 222.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.4
Pig sample Sample description nTPM
Midbrain
nTPM: 127.4
Samples: 4

Max nTPM: 225.7
Min nTPM: 30.3
Sample A Female 30.3
Sample B Female 88.2
Sample C Male 165.4
Sample D Male 225.7
Periaqueductal gray
nTPM: 97.9
Samples: 3

Max nTPM: 127.9
Min nTPM: 74.5
Sample B Female 91.3
Sample C Male 127.9
Sample D Male 74.5
Substantia nigra
nTPM: 99.8
Samples: 4

Max nTPM: 153.3
Min nTPM: 32.8
Sample A Female 143.1
Sample B Female 69.9
Sample C Male 153.3
Sample D Male 32.8
Superior colliculi
nTPM: 100.2
Samples: 4

Max nTPM: 188.7
Min nTPM: 25.2
Sample A Female 188.7
Sample B Female 25.2
Sample C Male 62.3
Sample D Male 124.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 390.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 390.3
Samples: 4

Max nTPM: 398.7
Min nTPM: 383.1
Sample A Male 398.7
Sample B Male 391.5
Sample C Female 383.1
Sample D Female 387.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 29.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 29.9
67767440 Antisense, RP_040916_01_G10, Mouse strain C57BL/6J (56 days, male) 29.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.