MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:72.0 nTPM
HPA:72.0 nTPM
GTEx:47.0 nTPM
FANTOM5:175.0 Scaled Tags Per Million
Pig:11.7 nTPM
Mouse:0.1 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.5
1833 Male, age 53, unknown 72.3
1830 Male, age 51, unknown 69.2
2411 Female, age 72, unknown 67.0
1870 Female, age 42, unknown 66.9
2019 Male, age 18, unknown 66.9
2828 Female, age 72, unknown 58.5
2219 Male, age 76, both hemispheres 49.4
1827 Male, age 72, unknown 49.2
2666 Male, age 74, left hemisphere 48.9
2586 Male, age 75, left hemisphere 46.4
Dorsal raphe nucleus
nTPM: 52.4
2750 Male, age 76, both hemispheres 70.6
2016 Female, age 72, unknown 53.7
1828 Male, age 53, unknown 53.6
2047 Male, age 72, unknown 42.4
2298 Female, age 72, unknown 41.9
Inferior colliculus
nTPM: 49.8
2849 Male, age 72, unknown 52.4
1848 Female, age 42, unknown 51.1
1890 Male, age 53, unknown 50.2
2097 Female, age 72, unknown 45.7
Median raphe nucleus
nTPM: 47.5
2220 Male, age 76, midline 47.5
Pedunculopontine tegmental nucleus
nTPM: 53.1
2334 Male, age 80, both hemispheres 56.8
1921 Female, age 85, both hemispheres 53.0
2338 Male, age 61, both hemispheres 49.4
Periaquaductal grey, anterior
nTPM: 46.3
2502 Female, age 75, unknown 51.8
1947 Male, age 18, unknown 45.6
1795 Male, age 51, unknown 41.6
Periaquaductal grey, dorsal
nTPM: 45.2
2464 Female, age 72, unknown 52.2
2850 Male, age 76, both hemispheres 45.7
1831 Male, age 72, unknown 45.1
1840 Male, age 53, unknown 37.9
Periaquaductal grey, lateral
nTPM: 49.2
2272 Male, age 74, both hemispheres 53.0
2053 Male, age 18, unknown 48.9
2140 Male, age 76, both hemispheres 45.8
Pretectal area
nTPM: 50.4
1815 Male, age 53, unknown 59.3
2667 Female, age 75, unknown 57.1
2316 Male, age 76, right hemisphere 54.7
1817 Female, age 42, unknown 54.0
2273 Male, age 74, both hemispheres 52.0
2407 Male, age 75, both hemispheres 50.5
2825 Male, age 18, unknown 50.2
2007 Male, age 72, unknown 48.7
2224 Female, age 72, unknown 45.1
1944 Female, age 72, unknown 43.2
1816 Male, age 51, unknown 39.8
Red nucleus
nTPM: 72.0
1865 Male, age 51, unknown 82.9
1904 Male, age 53, unknown 82.1
2823 Male, age 76, right hemisphere 81.1
1821 Female, age 72, unknown 78.4
2227 Male, age 72, unknown 78.3
2769 Male, age 72, unknown 77.2
1954 Female, age 42, unknown 73.7
2785 Male, age 18, unknown 71.7
2503 Female, age 72, unknown 69.6
2588 Male, age 74, left hemisphere 61.4
2725 Female, age 75, unknown 54.7
2584 Male, age 75, left hemisphere 53.0
Substantia nigra
nTPM: 49.3
1889 Female, age 72, unknown 54.3
2699 Male, age 18, unknown 53.8
2409 Female, age 72, unknown 53.6
1851 Male, age 51, unknown 53.2
2583 Male, age 75, right hemisphere 51.7
2590 Female, age 75, unknown 49.2
2241 Male, age 72, unknown 44.9
1916 Female, age 42, unknown 44.5
2665 Male, age 74, both hemispheres 43.9
1941 Male, age 53, unknown 43.5
Superior colliculus
nTPM: 54.2
1995 Male, age 72, unknown 70.2
1913 Female, age 42, unknown 69.0
1895 Male, age 76, right hemisphere 60.4
2587 Male, age 74, left hemisphere 56.2
1839 Male, age 51, unknown 55.7
2668 Female, age 75, unknown 51.7
1796 Male, age 53, unknown 48.1
2087 Female, age 72, unknown 45.3
2261 Male, age 18, unknown 42.8
2664 Male, age 75, both hemispheres 42.1
Ventral tegmental area
nTPM: 53.1
2223 Female, age 72, unknown 63.0
2410 Female, age 72, unknown 61.4
1942 Male, age 51, unknown 49.6
2218 Male, age 76, both hemispheres 49.3
1915 Female, age 42, unknown 49.0
2021 Male, age 53, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.0
Samples: 139

Max nTPM: 121.7
Min nTPM: 17.8
Std nTPM: 20.1
Median nTPM: 42.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 121.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 115.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 113.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 101.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 100.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 98.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 97.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 92.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 80.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 79.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.0
FF:10158-103A5 76 years, female 175.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.7
Pig sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 5.0
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 5.0
Sample C Male 4.2
Sample D Male 3.8
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 6.7
Min nTPM: 6.1
Sample B Female 6.1
Sample C Male 6.7
Sample D Male 6.1
Substantia nigra
nTPM: 5.0
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 6.4
Sample C Male 4.6
Sample D Male 5.1
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 31.3
Min nTPM: 4.0
Sample A Female 6.8
Sample B Female 31.3
Sample C Male 4.0
Sample D Male 4.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.1
Sample D Female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.