HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:49.5 nTPM
HPA:49.5 nTPM
GTEx:44.9 nTPM
FANTOM5:128.0 Scaled Tags Per Million
Pig:88.7 nTPM
Mouse:76.6 nTPM
Allen mouse:8.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047139Antibody HPA050539Antibody CAB034442Antibody CAB037251
Glial cells Not detectedNot detectedLowMedium
Neuronal cells HighHighHighHigh









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.5
Sample id Sample description nTPM
Hippocampus
nTPM: 49.5
1898 Male, age 80, left hemisphere 54.1
1855 Male, age 76, left hemisphere 52.8
1911 Female, age 85, right hemisphere 50.0
2148 Female, age 91, left hemisphere 47.4
2529 Female, age 94, left hemisphere 47.0
2621 Female, age 67, right hemisphere 45.4
Dentate gyrus
nTPM: 49.3
2010 Male, age 76, both hemispheres 54.6
2528 Male, age 74, both hemispheres 51.0
2246 Female, age 85, both hemispheres 49.2
1927 Female, age 91, both hemispheres 48.8
2530 Female, age 94, left hemisphere 48.7
2531 Female, age 67, both hemispheres 43.4
Entorhinal gyrus
nTPM: 47.1
2117 Female, age 91, right hemisphere 54.6
1938 Female, age 85, left hemisphere 50.9
1787 Male, age 76, left hemisphere 46.9
2764 Male, age 80, right hemisphere 43.9
2613 Female, age 94, left hemisphere 43.6
2686 Male, age 75, right hemisphere 42.8
Hippocampus, CA1
nTPM: 49.3
2045 Male, age 76, both hemispheres 52.9
1873 Female, age 85, both hemispheres 51.2
2527 Male, age 74, both hemispheres 48.1
2749 Male, age 80, left hemisphere 47.1
2082 Female, age 91, right hemisphere 47.0
Hippocampus, CA2
nTPM: 48.4
2249 Male, age 74, both hemispheres 52.3
1963 Male, age 80, left hemisphere 48.7
2113 Female, age 91, right hemisphere 48.2
1940 Female, age 85, left hemisphere 48.1
1892 Male, age 76, both hemispheres 47.6
2437 Female, age 94, left hemisphere 45.2
Hippocampus, CA3
nTPM: 48.2
1891 Female, age 85, both hemispheres 53.5
2436 Male, age 74, both hemispheres 48.5
1867 Male, age 76, both hemispheres 48.1
2137 Male, age 80, left hemisphere 47.9
2620 Female, age 94, left hemisphere 47.0
2861 Female, age 67, both hemispheres 44.1
Parahippocampal cortex
nTPM: 47.1
2250 Female, age 67, right hemisphere 50.8
1850 Male, age 80, both hemispheres 49.0
2693 Female, age 94, both hemispheres 48.5
1933 Female, age 85, both hemispheres 48.4
2692 Male, age 74, both hemispheres 48.1
1990 Female, age 91, right hemisphere 47.8
2018 Male, age 76, both hemispheres 46.5
2245 Female, age 91, both hemispheres 45.8
2532 Female, age 72, left hemisphere 45.5
2622 Female, age 67, right hemisphere 40.9
Perirhinal gyrus
nTPM: 47.4
1841 Female, age 85, right hemisphere 50.1
2521 Female, age 94, right hemisphere 47.8
2848 Male, age 76, right hemisphere 47.3
1847 Female, age 91, left hemisphere 46.5
1794 Male, age 80, right hemisphere 45.6
Subiculum
nTPM: 49.5
2729 Female, age 91, right hemisphere 53.5
2042 Male, age 76, both hemispheres 52.2
1901 Male, age 80, both hemispheres 50.4
1977 Female, age 85, both hemispheres 49.1
2619 Male, age 74, both hemispheres 48.5
2438 Female, age 94, left hemisphere 43.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 44.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.9
Samples: 197

Max nTPM: 93.9
Min nTPM: 25.3
Std nTPM: 10.6
Median nTPM: 43.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 93.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 90.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 75.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 70.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 69.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 68.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 67.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 66.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 65.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 65.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 64.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 128.0
FF:10169-103B7 60 years, female 131.8
FF:10153-102I9 76 years, female 124.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 88.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 88.8
Samples: 4

Max nTPM: 106.5
Min nTPM: 57.7
Sample A Female 106.5
Sample B Female 85.5
Sample C Male 105.3
Sample D Male 57.7
Entorhinal cortex
nTPM: 64.9
Samples: 4

Max nTPM: 73.3
Min nTPM: 55.1
Sample A Female 60.6
Sample B Female 73.3
Sample C Male 70.6
Sample D Male 55.1
Subiculum
nTPM: 72.2
Samples: 4

Max nTPM: 83.9
Min nTPM: 64.7
Sample A Female 83.9
Sample B Female 70.6
Sample C Male 64.7
Sample D Male 69.6
Ventral hippocampus
nTPM: 73.1
Samples: 4

Max nTPM: 77.9
Min nTPM: 61.3
Sample A Female 77.9
Sample B Female 61.3
Sample C Male 76.2
Sample D Male 76.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 76.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.1
Samples: 4

Max nTPM: 69.2
Min nTPM: 63.6
Sample A Male 66.9
Sample B Male 63.6
Sample C Female 68.6
Sample D Female 69.2
Hippocampal formation
nTPM: 76.6
Samples: 4

Max nTPM: 88.1
Min nTPM: 66.6
Sample A Male 66.6
Sample B Male 72.5
Sample C Female 79.3
Sample D Female 88.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.1
68910987 Antisense, RP_050203_01_G02, Mouse strain C57BL/6J (56 days, male) 8.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.