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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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6.709
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:19.6 nTPM
HPA:19.6 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:1.3 nTPM
Allen mouse:0.0 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA003497
Thalamus mean intensity 6.709
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 0.771
Parafascicular thalamic nucleus 4.124
Pregeniculate nucleus 6.709
Stria terminalis 1.158
Zona incerta 1.113
Anterodorsal thalamic nucleus -
Reticular thalamic nucleus 0.702
Vental anterior thalamic nucleus -
Medial habenular nucleus 1.001
Laterodorsal thalamic area 2.257
Paraventricular thalamic nucleus 4.270
Central medial thalamic area 5.413
Ventral lateral thalamic area -
Ventral medial thalamic area 0.407
Lateral habenulal nucleus 0.856
Ventral posterior thalamus 0.575
Anterior pretactal nucleus -
Retromammillary nucleus 0.813

THALAMUS - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 16.8
2497 Male, age 66, unknown 19.2
2032 Female, age 42, unknown 16.0
2396 Male, age 61, right hemisphere 15.1
Centromedial thalamic nucleus
nTPM: 19.6
2279 Female, age 85, left hemisphere 21.1
2401 Male, age 76, right hemisphere 18.1
Habenula
nTPM: 17.2
2203 Male, age 61, left hemisphere 17.5
2276 Male, age 66, unknown 17.4
2252 Male, age 62, unknown 17.2
1957 Male, age 80, both hemispheres 16.7
Lateral geniculate body
nTPM: 17.5
2857 Male, age 74, right hemisphere 20.3
2399 Male, age 61, left hemisphere 19.5
2659 Male, age 66, unknown 18.6
2841 Male, age 80, both hemispheres 16.7
2035 Female, age 72, unknown 16.6
1953 Male, age 62, unknown 16.5
2106 Female, age 67, right hemisphere 16.1
2575 Female, age 94, right hemisphere 15.9
Lateral thalamic nuclei
nTPM: 18.6
2661 Female, age 72, unknown 19.7
1903 Male, age 76, left hemisphere 19.5
2573 Female, age 94, left hemisphere 19.3
2577 Male, age 74, both hemispheres 17.5
2765 Female, age 67, both hemispheres 17.0
Medial dorsal thalamic nucleus
nTPM: 17.8
2572 Female, age 94, right hemisphere 18.9
2492 Male, age 75, right hemisphere 18.7
1859 Male, age 76, both hemispheres 18.6
2576 Male, age 74, both hemispheres 18.4
2660 Female, age 72, unknown 18.3
2283 Male, age 80, right hemisphere 18.2
1810 Male, age 48, unknown 18.1
2498 Male, age 66, unknown 18.1
2026 Male, age 62, unknown 17.5
2039 Female, age 72, unknown 17.3
2402 Female, age 67, both hemispheres 16.7
1930 Female, age 42, unknown 16.6
1971 Male, age 61, right hemisphere 16.5
Medial geniculate body
nTPM: 17.8
2207 Male, age 80, right hemisphere 19.7
2217 Female, age 72, unknown 18.6
2650 Female, age 94, left hemisphere 18.4
2049 Male, age 76, both hemispheres 17.7
2571 Male, age 75, right hemisphere 17.2
2657 Male, age 74, right hemisphere 16.8
1811 Female, age 42, unknown 16.4
Nucleus reuniens
nTPM: 17.1
2205 Male, age 80, left hemisphere 19.0
2212 Female, age 67, left hemisphere 17.0
2210 Female, age 85, left hemisphere 15.5
Nucleus rhomboideus
nTPM: 17.3
2206 Male, age 80, both hemispheres 19.1
2213 Female, age 67, left hemisphere 16.8
2280 Female, age 85, left hemisphere 16.1
Posterior thalamic nucleus
nTPM: 18.5
2655 Male, age 74, right hemisphere 20.2
2266 Male, age 76, right hemisphere 18.7
2649 Female, age 94, both hemispheres 17.7
2495 Female, age 67, right hemisphere 17.2
Pulvinar
nTPM: 18.1
2724 Male, age 74, right hemisphere 20.1
2582 Female, age 72, unknown 19.1
2214 Male, age 76, right hemisphere 19.0
1932 Male, age 80, right hemisphere 18.4
2398 Male, age 61, left hemisphere 18.3
2499 Male, age 66, unknown 18.2
2496 Female, age 67, right hemisphere 17.8
1929 Male, age 48, unknown 17.0
1899 Female, age 42, unknown 16.9
1972 Male, age 62, unknown 16.4
Subthalamic nucleus
nTPM: 15.8
2216 Male, age 48, unknown 17.6
2282 Male, age 61, both hemispheres 16.3
2406 Female, age 72, unknown 16.2
2779 Female, age 42, unknown 16.1
2056 Female, age 72, unknown 15.7
2124 Male, age 62, unknown 15.4
2275 Male, age 66, unknown 15.1
2658 Male, age 74, both hemispheres 14.0
Ventral posterolateral thalamic nucleus
nTPM: 18.1
2397 Male, age 61, right hemisphere 18.5
2570 Male, age 75, right hemisphere 18.5
2197 Male, age 80, both hemispheres 18.4
2581 Female, age 72, unknown 18.3
2740 Male, age 76, right hemisphere 18.0
2578 Male, age 74, both hemispheres 16.8
Ventral posteromedial thalamic nucleus
nTPM: 18.5
2127 Male, age 76, right hemisphere 20.0
2281 Male, age 75, right hemisphere 19.0
2758 Male, age 80, both hemispheres 18.6
2202 Male, age 61, left hemisphere 17.5
2653 Male, age 74, both hemispheres 17.4
Ventral thalamic nuclei
nTPM: 17.6
2204 Male, age 80, both hemispheres 20.5
2858 Female, age 72, unknown 18.9
1860 Male, age 76, both hemispheres 18.2
2285 Male, age 62, unknown 17.4
2580 Male, age 66, unknown 17.3
2652 Male, age 74, left hemisphere 17.3
1912 Female, age 42, unknown 16.7
1845 Male, age 48, unknown 16.1
2291 Female, age 72, unknown 15.8
Ventromedial nucleus
nTPM: 16.3
1822 Female, age 42, unknown 16.8
1982 Female, age 72, unknown 15.8
Zona incerta
nTPM: 16.6
2663 Female, age 72, unknown 18.7
2208 Male, age 80, right hemisphere 18.5
2403 Male, age 62, unknown 16.9
2215 Male, age 66, unknown 14.4
2822 Male, age 74, right hemisphere 14.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 45.9
FF:10154-103A1 76 years, female 45.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 3.1
Pig sample Sample description nTPM
Thalamus
nTPM: 3.1
Samples: 4

Max nTPM: 8.9
Min nTPM: 0.8
Sample A Female 1.3
Sample B Female 8.9
Sample C Male 1.5
Sample D Male 0.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 1.3
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.7
Sample A Male 1.1
Sample B Male 0.7
Sample C Female 2.2
Sample D Female 1.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.0
100142559 Antisense, RP_110519_02_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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