BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.4 nTPM
HPA:18.4 nTPM
GTEx:25.6 nTPM
FANTOM5:8.8 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:3.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029776
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.8
2481 Female, age 94, left hemisphere 17.0
1781 Male, age 74, unknown 16.7
2290 Female, age 72, unknown 15.5
1854 Male, age 80, left hemisphere 14.7
2289 Male, age 61, right hemisphere 14.5
2288 Male, age 75, left hemisphere 13.6
1857 Female, age 85, left hemisphere 13.4
2846 Female, age 79, unknown 12.9
Claustrum
nTPM: 12.1
2491 Male, age 75, both hemispheres 12.5
2645 Female, age 72, unknown 12.5
2196 Female, age 79, unknown 12.4
2198 Male, age 80, both hemispheres 12.4
2392 Female, age 94, both hemispheres 12.3
2568 Male, age 61, both hemispheres 12.3
2284 Female, age 91, both hemispheres 12.1
2292 Female, age 85, both hemispheres 11.7
1956 Male, age 74, unknown 11.1
Globus pallidus, externus
nTPM: 18.4
2646 Male, age 61, right hemisphere 23.2
1996 Male, age 80, right hemisphere 19.7
2567 Female, age 72, unknown 17.7
2772 Female, age 79, unknown 16.7
2395 Male, age 75, both hemispheres 14.7
Globus pallidus, internus
nTPM: 16.6
2037 Male, age 80, right hemisphere 19.6
2483 Female, age 94, right hemisphere 19.0
1818 Male, age 74, unknown 16.7
2778 Female, age 91, both hemispheres 16.1
2566 Female, age 72, unknown 15.3
2111 Female, age 85, right hemisphere 14.9
2287 Male, age 75, right hemisphere 14.6
Nucleus accumbens
nTPM: 14.0
2732 Male, age 80, right hemisphere 15.4
2286 Male, age 75, left hemisphere 15.1
1783 Male, age 74, unknown 14.2
1806 Female, age 85, left hemisphere 14.1
2824 Male, age 61, right hemisphere 13.9
2391 Female, age 94, left hemisphere 13.5
2698 Female, age 72, unknown 13.0
1856 Female, age 91, right hemisphere 12.7
Nucleus basalis of Meynert
nTPM: 16.7
2569 Male, age 61, both hemispheres 25.2
2821 Male, age 75, both hemispheres 14.5
2484 Female, age 94, left hemisphere 14.3
2393 Male, age 80, right hemisphere 13.0
Nucleus of the diagonal band
nTPM: 11.9
1812 Female, age 91, both hemispheres 12.6
2775 Male, age 80, right hemisphere 12.3
2195 Female, age 85, both hemispheres 11.7
1979 Male, age 74, unknown 11.5
2029 Male, age 61, right hemisphere 11.2
Olfactory tubercle
nTPM: 12.6
1846 Male, age 80, right hemisphere 14.2
2856 Male, age 75, right hemisphere 12.7
2487 Female, age 94, left hemisphere 11.8
1998 Female, age 91, both hemispheres 11.7
Putamen
nTPM: 14.0
2647 Male, age 75, left hemisphere 16.5
2489 Female, age 72, unknown 15.5
2482 Female, age 94, left hemisphere 14.6
1838 Male, age 80, right hemisphere 13.3
2466 Female, age 79, unknown 12.9
1829 Male, age 74, unknown 12.7
1937 Female, age 91, right hemisphere 12.6
Septal nuclei
nTPM: 12.4
2199 Male, age 80, right hemisphere 14.0
2059 Female, age 85, both hemispheres 13.2
2009 Female, age 91, both hemispheres 12.6
2031 Female, age 72, unknown 12.6
2394 Male, age 61, left hemisphere 12.4
2629 Female, age 94, right hemisphere 11.8
1960 Male, age 74, unknown 10.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 102.3
Min nTPM: 3.8
Std nTPM: 11.8
Median nTPM: 20.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 102.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 54.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 54.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 53.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 49.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 48.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 48.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 48.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 48.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 47.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.4
Samples: 246

Max nTPM: 132.6
Min nTPM: 5.3
Std nTPM: 15.3
Median nTPM: 14.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 132.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 115.3
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 84.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 71.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 64.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 64.4
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 56.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 56.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 55.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 52.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 49.6
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Brain - Putamen (basal ganglia)
Average nTPM: 25.6
Samples: 205

Max nTPM: 105.9
Min nTPM: 5.4
Std nTPM: 14.1
Median nTPM: 22.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 105.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 81.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 65.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 59.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 57.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 56.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 53.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 53.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 52.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 52.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 51.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.8
FF:10164-103B2 76 years, female 8.8
Globus pallidus
Scaled Tags Per Million: 6.2
FF:10161-103A8 76 years, female 7.0
FF:10175-103C4 60 years, female 5.5
Nucleus accumbens
Scaled Tags Per Million: 6.1
FF:10037-101F1 23-56 years, mixed 6.1
Putamen
Scaled Tags Per Million: 3.5
FF:10176-103C5 60 years, female 3.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Caudate
nTPM: 5.7
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.1
Sample A Female 5.3
Sample B Female 5.4
Sample C Male 6.8
Sample D Male 5.1
Putamen
nTPM: 5.2
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 5.1
Sample C Male 5.5
Sample D Male 6.1
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.7
Sample A Female 5.1
Sample B Female 5.2
Sample C Male 4.7
Sample D Male 6.8
Ventral pallidum
nTPM: 4.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 4.6
Sample C Male 4.8
Sample D Male 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.6
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.8
Sample A Male 3.1
Sample B Male 1.8
Sample C Female 2.4
Sample D Female 3.1
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.5
Sample A Male 2.5
Sample B Male 2.7
Sample C Female 4.2
Sample D Female 2.7
Ventral forebrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.7
Sample A Male 3.5
Sample B Male 3.3
Sample C Female 3.3
Sample D Female 2.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
79632236 Antisense, RP_071018_01_H11, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
79632236 Antisense, RP_071018_01_H11, Mouse strain C57BL/6J (56 days, male) 0.1

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