BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:15.1 nTPM
HPA:15.1 nTPM
GTEx:11.8 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:0.8 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA069497Antibody CAB002786Antibody CAB069881
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.8
2290 Female, age 72, unknown 14.6
2288 Male, age 75, left hemisphere 14.2
2481 Female, age 94, left hemisphere 14.2
1857 Female, age 85, left hemisphere 13.8
2289 Male, age 61, right hemisphere 13.8
1781 Male, age 74, unknown 13.4
1854 Male, age 80, left hemisphere 13.4
2846 Female, age 79, unknown 12.8
Claustrum
nTPM: 13.7
2198 Male, age 80, both hemispheres 14.6
2491 Male, age 75, both hemispheres 14.5
2645 Female, age 72, unknown 14.3
2284 Female, age 91, both hemispheres 14.1
2568 Male, age 61, both hemispheres 13.7
2292 Female, age 85, both hemispheres 13.5
1956 Male, age 74, unknown 13.1
2196 Female, age 79, unknown 13.0
2392 Female, age 94, both hemispheres 12.7
Globus pallidus, externus
nTPM: 15.1
2646 Male, age 61, right hemisphere 15.9
2772 Female, age 79, unknown 15.2
1996 Male, age 80, right hemisphere 15.1
2395 Male, age 75, both hemispheres 15.0
2567 Female, age 72, unknown 14.4
Globus pallidus, internus
nTPM: 14.7
2483 Female, age 94, right hemisphere 15.1
2037 Male, age 80, right hemisphere 15.0
2111 Female, age 85, right hemisphere 14.9
1818 Male, age 74, unknown 14.8
2287 Male, age 75, right hemisphere 14.8
2778 Female, age 91, both hemispheres 14.4
2566 Female, age 72, unknown 13.9
Nucleus accumbens
nTPM: 13.7
2732 Male, age 80, right hemisphere 14.2
1806 Female, age 85, left hemisphere 13.9
2286 Male, age 75, left hemisphere 13.8
2391 Female, age 94, left hemisphere 13.8
1856 Female, age 91, right hemisphere 13.7
2698 Female, age 72, unknown 13.7
2824 Male, age 61, right hemisphere 13.3
1783 Male, age 74, unknown 12.9
Nucleus basalis of Meynert
nTPM: 14.3
2569 Male, age 61, both hemispheres 15.8
2821 Male, age 75, both hemispheres 14.0
2393 Male, age 80, right hemisphere 13.8
2484 Female, age 94, left hemisphere 13.7
Nucleus of the diagonal band
nTPM: 13.5
2775 Male, age 80, right hemisphere 13.7
1979 Male, age 74, unknown 13.6
2195 Female, age 85, both hemispheres 13.5
2029 Male, age 61, right hemisphere 13.4
1812 Female, age 91, both hemispheres 13.2
Olfactory tubercle
nTPM: 13.5
1998 Female, age 91, both hemispheres 14.4
1846 Male, age 80, right hemisphere 13.5
2487 Female, age 94, left hemisphere 13.1
2856 Male, age 75, right hemisphere 13.0
Putamen
nTPM: 13.7
2647 Male, age 75, left hemisphere 14.4
1937 Female, age 91, right hemisphere 13.8
2466 Female, age 79, unknown 13.8
2489 Female, age 72, unknown 13.8
2482 Female, age 94, left hemisphere 13.6
1838 Male, age 80, right hemisphere 13.4
1829 Male, age 74, unknown 12.8
Septal nuclei
nTPM: 13.8
2059 Female, age 85, both hemispheres 15.2
2199 Male, age 80, right hemisphere 14.3
1960 Male, age 74, unknown 13.7
2031 Female, age 72, unknown 13.6
2009 Female, age 91, both hemispheres 13.5
2394 Male, age 61, left hemisphere 13.4
2629 Female, age 94, right hemisphere 12.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.1
Samples: 246

Max nTPM: 22.7
Min nTPM: 3.8
Std nTPM: 3.4
Median nTPM: 10.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 22.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 21.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 21.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 21.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 21.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 20.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 19.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 19.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 19.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 17.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 17.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.3
Samples: 246

Max nTPM: 30.6
Min nTPM: 4.3
Std nTPM: 3.9
Median nTPM: 10.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 30.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 30.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 25.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 23.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 20.1
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 20.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 19.7
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 19.5
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 19.5
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 19.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 19.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 11.8
Samples: 205

Max nTPM: 25.9
Min nTPM: 5.0
Std nTPM: 3.6
Median nTPM: 11.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 25.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 22.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 21.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 21.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 20.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 20.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 20.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 20.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 19.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 19.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 19.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.8
FF:10164-103B2 76 years, female 9.8
Globus pallidus
Scaled Tags Per Million: 12.7
FF:10175-103C4 60 years, female 16.5
FF:10161-103A8 76 years, female 8.8
Nucleus accumbens
Scaled Tags Per Million: 16.5
FF:10037-101F1 23-56 years, mixed 16.5
Putamen
Scaled Tags Per Million: 13.7
FF:10176-103C5 60 years, female 13.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.4
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.2
Sample A Female 4.8
Sample B Female 7.1
Sample C Male 5.6
Sample D Male 4.2
Putamen
nTPM: 5.7
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.4
Sample A Female 6.5
Sample B Female 4.4
Sample C Male 7.1
Sample D Male 4.8
Septum
nTPM: 6.6
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 5.7
Sample C Male 7.4
Sample D Male 7.7
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 6.6
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 6.6
Sample C Male 5.6
Sample D Male 4.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Male 0.5
Sample B Male 0.3
Sample C Female 0.4
Sample D Female 0.9
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.6
Sample A Male 0.8
Sample B Male 0.7
Sample C Female 1.1
Sample D Female 0.6
Ventral forebrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Male 0.7
Sample B Male 0.5
Sample C Female 0.9
Sample D Female 0.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71612271 Antisense, RP_050927_02_D10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71612271 Antisense, RP_050927_02_D10, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.