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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:49.8 nTPM
HPA:49.8 nTPM
GTEx:61.0 nTPM
FANTOM5:124.7 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 49.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 47.3
1981 Female, age 72, midline 48.8
2565 Male, age 75, midline 47.4
2194 Female, age 79, both hemispheres 46.9
2816 Male, age 47, midline 46.9
2048 Male, age 55, midline 46.7
Cervical spinal cord, dorsal horn
nTPM: 49.8
2296 Male, age 66, both hemispheres 55.0
2173 Female, age 72, unknown 51.0
2069 Male, age 47, both hemispheres 49.2
1877 Male, age 55, unknown 48.5
2721 Male, age 90, both hemispheres 48.5
2297 Male, age 75, both hemispheres 46.3
Cervical spinal cord, ventral horn
nTPM: 48.5
2480 Male, age 75, both hemispheres 50.0
2098 Female, age 72, unknown 49.6
2809 Male, age 90, both hemispheres 49.0
2820 Female, age 79, both hemispheres 47.8
2068 Male, age 55, unknown 47.2
2295 Male, age 66, both hemispheres 47.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 61.0
Samples: 159

Max nTPM: 98.8
Min nTPM: 36.7
Std nTPM: 9.2
Median nTPM: 60.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 98.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 90.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 79.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 79.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 77.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 77.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 77.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 76.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 76.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 74.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 74.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 74.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 73.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 73.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 73.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 72.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 72.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 71.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 70.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 70.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 70.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 69.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 69.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 69.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 69.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 69.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 69.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 69.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 69.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 68.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 68.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 68.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 68.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 68.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 68.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 67.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 67.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 67.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 67.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 67.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 66.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 66.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 65.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 65.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 65.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 65.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 65.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 64.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 64.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 64.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 64.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 64.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 64.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 64.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 63.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 63.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 63.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 63.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 63.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 62.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 62.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 62.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 62.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 62.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 62.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 62.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 62.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 62.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 61.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 61.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 61.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 61.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 61.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 61.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 61.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 60.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 60.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 60.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 60.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 60.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 60.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 60.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 60.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 60.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 60.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 60.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 60.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 60.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 59.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 59.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 59.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 59.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 59.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 59.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 59.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 59.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 59.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 59.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 58.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 58.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 58.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 58.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 58.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 57.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 57.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 57.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 57.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 57.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 57.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 56.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 56.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 56.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 56.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 56.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 56.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 55.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 55.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 55.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 55.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 54.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 54.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 54.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 54.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 54.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 54.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 54.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 54.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 54.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 53.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 53.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 53.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 53.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 53.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 52.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 51.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 51.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 50.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 50.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 49.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 48.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 48.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 47.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 47.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 47.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 46.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 45.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 45.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 44.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 43.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 40.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 40.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 36.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 124.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 124.7
FF:10181-103D1 60 years, female 144.3
FF:10159-103A6 76 years, female 105.2

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