MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.8 nTPM
HPA:68.8 nTPM
GTEx:105.3 nTPM
FANTOM5:219.8 Scaled Tags Per Million
Pig:50.7 nTPM
Mouse:72.0 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.9
1870 Female, age 42, unknown 68.8
2019 Male, age 18, unknown 68.6
2411 Female, age 72, unknown 66.2
2586 Male, age 75, left hemisphere 65.8
1833 Male, age 53, unknown 65.7
2828 Female, age 72, unknown 65.4
1827 Male, age 72, unknown 65.3
1830 Male, age 51, unknown 65.3
2666 Male, age 74, left hemisphere 64.1
2219 Male, age 76, both hemispheres 63.6
Dorsal raphe nucleus
nTPM: 67.8
2298 Female, age 72, unknown 68.8
2750 Male, age 76, both hemispheres 68.5
1828 Male, age 53, unknown 67.7
2047 Male, age 72, unknown 67.3
2016 Female, age 72, unknown 66.5
Inferior colliculus
nTPM: 66.2
1890 Male, age 53, unknown 69.9
2097 Female, age 72, unknown 67.8
1848 Female, age 42, unknown 65.1
2849 Male, age 72, unknown 61.8
Median raphe nucleus
nTPM: 65.4
2220 Male, age 76, midline 65.4
Pedunculopontine tegmental nucleus
nTPM: 65.5
2334 Male, age 80, both hemispheres 68.2
1921 Female, age 85, both hemispheres 66.4
2338 Male, age 61, both hemispheres 61.7
Periaquaductal grey, anterior
nTPM: 64.7
1947 Male, age 18, unknown 68.3
2502 Female, age 75, unknown 63.2
1795 Male, age 51, unknown 62.5
Periaquaductal grey, dorsal
nTPM: 62.5
2464 Female, age 72, unknown 64.1
1831 Male, age 72, unknown 62.9
2850 Male, age 76, both hemispheres 62.4
1840 Male, age 53, unknown 60.7
Periaquaductal grey, lateral
nTPM: 62.4
2272 Male, age 74, both hemispheres 65.0
2053 Male, age 18, unknown 63.4
2140 Male, age 76, both hemispheres 58.9
Pretectal area
nTPM: 65.9
2007 Male, age 72, unknown 69.1
2667 Female, age 75, unknown 68.2
1944 Female, age 72, unknown 67.6
1817 Female, age 42, unknown 66.5
2407 Male, age 75, both hemispheres 66.1
1815 Male, age 53, unknown 65.8
1816 Male, age 51, unknown 65.8
2273 Male, age 74, both hemispheres 65.7
2224 Female, age 72, unknown 64.9
2825 Male, age 18, unknown 63.3
2316 Male, age 76, right hemisphere 61.7
Red nucleus
nTPM: 68.8
1821 Female, age 72, unknown 73.7
1904 Male, age 53, unknown 71.0
1954 Female, age 42, unknown 70.9
1865 Male, age 51, unknown 70.0
2823 Male, age 76, right hemisphere 69.8
2227 Male, age 72, unknown 69.4
2503 Female, age 72, unknown 69.1
2769 Male, age 72, unknown 68.9
2785 Male, age 18, unknown 67.7
2725 Female, age 75, unknown 66.7
2588 Male, age 74, left hemisphere 64.5
2584 Male, age 75, left hemisphere 64.4
Substantia nigra
nTPM: 67.7
1851 Male, age 51, unknown 70.8
2241 Male, age 72, unknown 69.5
1889 Female, age 72, unknown 69.1
1941 Male, age 53, unknown 68.5
2409 Female, age 72, unknown 68.2
1916 Female, age 42, unknown 68.0
2583 Male, age 75, right hemisphere 67.5
2590 Female, age 75, unknown 66.5
2699 Male, age 18, unknown 65.5
2665 Male, age 74, both hemispheres 63.3
Superior colliculus
nTPM: 65.8
2668 Female, age 75, unknown 67.9
1895 Male, age 76, right hemisphere 67.6
1913 Female, age 42, unknown 67.3
2587 Male, age 74, left hemisphere 67.1
2087 Female, age 72, unknown 65.9
2664 Male, age 75, both hemispheres 65.7
1995 Male, age 72, unknown 65.2
1839 Male, age 51, unknown 64.3
2261 Male, age 18, unknown 63.9
1796 Male, age 53, unknown 62.9
Ventral tegmental area
nTPM: 66.0
1915 Female, age 42, unknown 66.9
2223 Female, age 72, unknown 66.4
1942 Male, age 51, unknown 66.3
2410 Female, age 72, unknown 66.0
2218 Male, age 76, both hemispheres 65.8
2021 Male, age 53, unknown 64.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.3
Samples: 139

Max nTPM: 189.1
Min nTPM: 46.8
Std nTPM: 21.8
Median nTPM: 102.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 189.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 168.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 159.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 157.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 153.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 147.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 143.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 141.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 140.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 139.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 135.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.8
FF:10158-103A5 76 years, female 219.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.7
Pig sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 57.7
Min nTPM: 40.0
Sample A Female 57.7
Sample B Female 42.7
Sample C Male 40.0
Sample D Male 43.4
Periaqueductal gray
nTPM: 37.5
Samples: 3

Max nTPM: 40.3
Min nTPM: 36.0
Sample B Female 40.3
Sample C Male 36.0
Sample D Male 36.3
Substantia nigra
nTPM: 39.5
Samples: 4

Max nTPM: 51.9
Min nTPM: 29.8
Sample A Female 51.9
Sample B Female 29.8
Sample C Male 33.3
Sample D Male 42.8
Superior colliculi
nTPM: 50.7
Samples: 4

Max nTPM: 64.7
Min nTPM: 30.3
Sample A Female 60.4
Sample B Female 30.3
Sample C Male 64.7
Sample D Male 47.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.0
Samples: 4

Max nTPM: 75.6
Min nTPM: 68.9
Sample A Male 75.6
Sample B Male 71.2
Sample C Female 68.9
Sample D Female 72.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70303534 Antisense, RP_050609_01_F12, Mouse strain C57BL/6J (56 days, male) 1.3
73930820 Antisense, RP_051214_04_C04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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