MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:123.8 nTPM
HPA:123.8 nTPM
GTEx:125.8 nTPM
FANTOM5:270.8 Scaled Tags Per Million
Pig:67.3 nTPM
Mouse:128.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.7
1830 Male, age 51, unknown 118.0
2666 Male, age 74, left hemisphere 115.4
1870 Female, age 42, unknown 113.7
2586 Male, age 75, left hemisphere 111.4
1833 Male, age 53, unknown 111.1
2411 Female, age 72, unknown 107.3
2019 Male, age 18, unknown 106.4
2828 Female, age 72, unknown 95.1
1827 Male, age 72, unknown 93.3
2219 Male, age 76, both hemispheres 85.6
Dorsal raphe nucleus
nTPM: 93.0
2750 Male, age 76, both hemispheres 106.5
2016 Female, age 72, unknown 98.5
1828 Male, age 53, unknown 93.4
2047 Male, age 72, unknown 88.2
2298 Female, age 72, unknown 78.4
Inferior colliculus
nTPM: 93.2
1890 Male, age 53, unknown 96.4
1848 Female, age 42, unknown 95.5
2849 Male, age 72, unknown 92.2
2097 Female, age 72, unknown 88.6
Median raphe nucleus
nTPM: 90.8
2220 Male, age 76, midline 90.8
Pedunculopontine tegmental nucleus
nTPM: 98.2
2334 Male, age 80, both hemispheres 103.7
2338 Male, age 61, both hemispheres 103.3
1921 Female, age 85, both hemispheres 87.6
Periaquaductal grey, anterior
nTPM: 92.3
2502 Female, age 75, unknown 100.1
1947 Male, age 18, unknown 94.0
1795 Male, age 51, unknown 82.8
Periaquaductal grey, dorsal
nTPM: 88.4
2464 Female, age 72, unknown 95.8
1831 Male, age 72, unknown 90.2
2850 Male, age 76, both hemispheres 88.0
1840 Male, age 53, unknown 79.4
Periaquaductal grey, lateral
nTPM: 83.6
2053 Male, age 18, unknown 87.7
2140 Male, age 76, both hemispheres 83.4
2272 Male, age 74, both hemispheres 79.6
Pretectal area
nTPM: 87.0
2316 Male, age 76, right hemisphere 95.8
1815 Male, age 53, unknown 95.6
2407 Male, age 75, both hemispheres 93.8
1817 Female, age 42, unknown 92.3
2825 Male, age 18, unknown 91.7
2007 Male, age 72, unknown 91.3
2224 Female, age 72, unknown 82.5
1944 Female, age 72, unknown 81.5
1816 Male, age 51, unknown 78.2
2273 Male, age 74, both hemispheres 77.7
2667 Female, age 75, unknown 76.2
Red nucleus
nTPM: 123.8
2503 Female, age 72, unknown 140.3
1865 Male, age 51, unknown 136.3
1904 Male, age 53, unknown 131.2
1821 Female, age 72, unknown 126.9
2227 Male, age 72, unknown 126.9
1954 Female, age 42, unknown 126.7
2588 Male, age 74, left hemisphere 126.6
2769 Male, age 72, unknown 125.3
2725 Female, age 75, unknown 115.8
2823 Male, age 76, right hemisphere 115.5
2785 Male, age 18, unknown 111.4
2584 Male, age 75, left hemisphere 103.0
Substantia nigra
nTPM: 94.5
2699 Male, age 18, unknown 100.7
2583 Male, age 75, right hemisphere 98.7
2665 Male, age 74, both hemispheres 98.7
1851 Male, age 51, unknown 96.8
2590 Female, age 75, unknown 96.4
2409 Female, age 72, unknown 94.6
1889 Female, age 72, unknown 93.4
1941 Male, age 53, unknown 91.5
2241 Male, age 72, unknown 89.8
1916 Female, age 42, unknown 84.2
Superior colliculus
nTPM: 96.8
2587 Male, age 74, left hemisphere 106.3
1995 Male, age 72, unknown 105.9
2668 Female, age 75, unknown 105.5
1913 Female, age 42, unknown 102.7
1839 Male, age 51, unknown 100.2
2664 Male, age 75, both hemispheres 97.7
1895 Male, age 76, right hemisphere 94.0
1796 Male, age 53, unknown 86.6
2261 Male, age 18, unknown 84.6
2087 Female, age 72, unknown 84.1
Ventral tegmental area
nTPM: 97.0
2223 Female, age 72, unknown 117.8
2410 Female, age 72, unknown 96.1
2021 Male, age 53, unknown 95.4
1942 Male, age 51, unknown 93.1
1915 Female, age 42, unknown 90.5
2218 Male, age 76, both hemispheres 89.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 125.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 125.8
Samples: 139

Max nTPM: 364.5
Min nTPM: 38.0
Std nTPM: 63.3
Median nTPM: 117.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 364.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 340.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 295.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 294.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 273.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 258.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 251.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 242.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 238.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 238.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 231.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 270.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 270.8
FF:10158-103A5 76 years, female 270.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.3
Pig sample Sample description nTPM
Midbrain
nTPM: 67.3
Samples: 4

Max nTPM: 106.4
Min nTPM: 45.3
Sample A Female 106.4
Sample B Female 58.5
Sample C Male 45.3
Sample D Male 58.9
Periaqueductal gray
nTPM: 45.1
Samples: 3

Max nTPM: 47.2
Min nTPM: 41.7
Sample B Female 47.2
Sample C Male 41.7
Sample D Male 46.3
Substantia nigra
nTPM: 57.9
Samples: 4

Max nTPM: 68.7
Min nTPM: 48.1
Sample A Female 64.6
Sample B Female 48.1
Sample C Male 50.1
Sample D Male 68.7
Superior colliculi
nTPM: 54.1
Samples: 4

Max nTPM: 63.6
Min nTPM: 42.6
Sample A Female 63.6
Sample B Female 42.6
Sample C Male 51.0
Sample D Male 59.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.3
Samples: 4

Max nTPM: 132.9
Min nTPM: 120.9
Sample A Male 120.9
Sample B Male 132.9
Sample C Female 131.1
Sample D Female 128.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
2354 Antisense, RP_Baylor_102875, Mouse strain C57BL/6J (56 days, male) 0.7
2353 Antisense, RP_Baylor_102875, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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