MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:658.1 nTPM
HPA:658.1 nTPM
GTEx:1337.1 nTPM
FANTOM5:165.4 Scaled Tags Per Million
Pig:297.5 nTPM
Mouse:548.6 nTPM
Allen mouse:15.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 658.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 638.5
2411 Female, age 72, unknown 651.4
1870 Female, age 42, unknown 648.0
1827 Male, age 72, unknown 637.2
2666 Male, age 74, left hemisphere 637.2
1830 Male, age 51, unknown 636.4
1833 Male, age 53, unknown 635.3
2219 Male, age 76, both hemispheres 635.1
2586 Male, age 75, left hemisphere 635.1
2828 Female, age 72, unknown 635.1
2019 Male, age 18, unknown 634.3
Dorsal raphe nucleus
nTPM: 643.0
2016 Female, age 72, unknown 659.7
2750 Male, age 76, both hemispheres 647.6
1828 Male, age 53, unknown 640.2
2047 Male, age 72, unknown 634.5
2298 Female, age 72, unknown 632.9
Inferior colliculus
nTPM: 638.1
2849 Male, age 72, unknown 643.9
1890 Male, age 53, unknown 640.7
1848 Female, age 42, unknown 634.4
2097 Female, age 72, unknown 633.3
Median raphe nucleus
nTPM: 658.1
2220 Male, age 76, midline 658.1
Pedunculopontine tegmental nucleus
nTPM: 639.7
1921 Female, age 85, both hemispheres 644.9
2338 Male, age 61, both hemispheres 639.2
2334 Male, age 80, both hemispheres 634.8
Periaquaductal grey, anterior
nTPM: 634.9
1795 Male, age 51, unknown 636.7
1947 Male, age 18, unknown 635.3
2502 Female, age 75, unknown 632.6
Periaquaductal grey, dorsal
nTPM: 634.7
1831 Male, age 72, unknown 635.9
2464 Female, age 72, unknown 634.9
2850 Male, age 76, both hemispheres 634.0
1840 Male, age 53, unknown 633.9
Periaquaductal grey, lateral
nTPM: 640.3
2272 Male, age 74, both hemispheres 649.7
2140 Male, age 76, both hemispheres 636.6
2053 Male, age 18, unknown 634.6
Pretectal area
nTPM: 636.6
2825 Male, age 18, unknown 646.1
2224 Female, age 72, unknown 643.3
2273 Male, age 74, both hemispheres 637.9
2407 Male, age 75, both hemispheres 636.3
2316 Male, age 76, right hemisphere 635.4
1816 Male, age 51, unknown 635.0
1815 Male, age 53, unknown 634.9
1944 Female, age 72, unknown 634.6
2007 Male, age 72, unknown 634.1
1817 Female, age 42, unknown 633.0
2667 Female, age 75, unknown 632.4
Red nucleus
nTPM: 637.7
2227 Male, age 72, unknown 653.0
2503 Female, age 72, unknown 640.4
1821 Female, age 72, unknown 638.6
2725 Female, age 75, unknown 638.2
1904 Male, age 53, unknown 636.4
1865 Male, age 51, unknown 635.8
1954 Female, age 42, unknown 635.7
2584 Male, age 75, left hemisphere 635.7
2785 Male, age 18, unknown 635.0
2769 Male, age 72, unknown 634.8
2588 Male, age 74, left hemisphere 634.7
2823 Male, age 76, right hemisphere 634.5
Substantia nigra
nTPM: 637.2
2590 Female, age 75, unknown 644.9
2699 Male, age 18, unknown 640.9
2665 Male, age 74, both hemispheres 639.0
1941 Male, age 53, unknown 638.0
2409 Female, age 72, unknown 636.6
2583 Male, age 75, right hemisphere 635.6
1851 Male, age 51, unknown 635.3
1889 Female, age 72, unknown 634.7
2241 Male, age 72, unknown 634.5
1916 Female, age 42, unknown 632.6
Superior colliculus
nTPM: 637.7
1895 Male, age 76, right hemisphere 640.8
1913 Female, age 42, unknown 640.7
2668 Female, age 75, unknown 640.2
1839 Male, age 51, unknown 639.4
2664 Male, age 75, both hemispheres 638.7
1796 Male, age 53, unknown 637.2
2087 Female, age 72, unknown 635.4
2261 Male, age 18, unknown 635.4
1995 Male, age 72, unknown 634.8
2587 Male, age 74, left hemisphere 633.9
Ventral tegmental area
nTPM: 641.6
1915 Female, age 42, unknown 655.9
2223 Female, age 72, unknown 646.7
1942 Male, age 51, unknown 639.3
2021 Male, age 53, unknown 639.1
2218 Male, age 76, both hemispheres 634.8
2410 Female, age 72, unknown 633.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1337.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1337.1
Samples: 139

Max nTPM: 4901.1
Min nTPM: 467.8
Std nTPM: 573.7
Median nTPM: 1222.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4901.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3534.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2609.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2560.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2533.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2513.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2413.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2333.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2267.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2231.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2184.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.4
FF:10158-103A5 76 years, female 165.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 297.5
Pig sample Sample description nTPM
Midbrain
nTPM: 287.5
Samples: 4

Max nTPM: 510.5
Min nTPM: 170.6
Sample A Female 510.5
Sample B Female 289.0
Sample C Male 179.8
Sample D Male 170.6
Periaqueductal gray
nTPM: 208.1
Samples: 3

Max nTPM: 227.4
Min nTPM: 193.4
Sample B Female 227.4
Sample C Male 203.4
Sample D Male 193.4
Substantia nigra
nTPM: 297.5
Samples: 4

Max nTPM: 444.3
Min nTPM: 216.5
Sample A Female 444.3
Sample B Female 277.5
Sample C Male 216.5
Sample D Male 251.5
Superior colliculi
nTPM: 291.0
Samples: 4

Max nTPM: 400.8
Min nTPM: 222.8
Sample A Female 400.8
Sample B Female 292.7
Sample C Male 222.8
Sample D Male 247.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 548.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 548.6
Samples: 4

Max nTPM: 599.4
Min nTPM: 503.1
Sample A Male 599.4
Sample B Male 517.8
Sample C Female 503.1
Sample D Female 574.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
68563128 Antisense, RP_050125_01_B08, Mouse strain C57BL/6J (56 days, male) 15.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.