BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:52.6 nTPM
HPA:52.6 nTPM
GTEx:46.0 nTPM
FANTOM5:119.4 Scaled Tags Per Million
Pig:132.2 nTPM

CAUDATE - Antibody stainingi
Antibody HPA048934
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.7
1854 Male, age 80, left hemisphere 48.3
2288 Male, age 75, left hemisphere 46.7
2846 Female, age 79, unknown 46.3
1857 Female, age 85, left hemisphere 46.2
1781 Male, age 74, unknown 45.0
2290 Female, age 72, unknown 44.0
2481 Female, age 94, left hemisphere 41.2
2289 Male, age 61, right hemisphere 40.2
Claustrum
nTPM: 45.8
2491 Male, age 75, both hemispheres 48.5
1956 Male, age 74, unknown 47.6
2392 Female, age 94, both hemispheres 47.3
2568 Male, age 61, both hemispheres 47.2
2198 Male, age 80, both hemispheres 46.9
2196 Female, age 79, unknown 45.5
2284 Female, age 91, both hemispheres 45.1
2645 Female, age 72, unknown 44.1
2292 Female, age 85, both hemispheres 40.4
Globus pallidus, externus
nTPM: 41.3
2567 Female, age 72, unknown 42.3
1996 Male, age 80, right hemisphere 41.5
2772 Female, age 79, unknown 41.5
2395 Male, age 75, both hemispheres 41.0
2646 Male, age 61, right hemisphere 40.1
Globus pallidus, internus
nTPM: 40.7
2483 Female, age 94, right hemisphere 42.3
2287 Male, age 75, right hemisphere 41.4
2566 Female, age 72, unknown 41.3
1818 Male, age 74, unknown 40.8
2778 Female, age 91, both hemispheres 40.5
2037 Male, age 80, right hemisphere 39.8
2111 Female, age 85, right hemisphere 38.9
Nucleus accumbens
nTPM: 49.2
1856 Female, age 91, right hemisphere 57.9
2824 Male, age 61, right hemisphere 55.5
1806 Female, age 85, left hemisphere 49.3
2286 Male, age 75, left hemisphere 47.6
2698 Female, age 72, unknown 46.8
1783 Male, age 74, unknown 46.6
2391 Female, age 94, left hemisphere 46.1
2732 Male, age 80, right hemisphere 43.8
Nucleus basalis of Meynert
nTPM: 43.5
2821 Male, age 75, both hemispheres 46.2
2393 Male, age 80, right hemisphere 44.4
2484 Female, age 94, left hemisphere 42.7
2569 Male, age 61, both hemispheres 40.6
Nucleus of the diagonal band
nTPM: 51.4
2775 Male, age 80, right hemisphere 56.0
1812 Female, age 91, both hemispheres 50.9
2195 Female, age 85, both hemispheres 50.5
2029 Male, age 61, right hemisphere 50.4
1979 Male, age 74, unknown 49.3
Olfactory tubercle
nTPM: 52.6
1846 Male, age 80, right hemisphere 54.6
2487 Female, age 94, left hemisphere 53.6
1998 Female, age 91, both hemispheres 53.0
2856 Male, age 75, right hemisphere 49.0
Putamen
nTPM: 44.8
1937 Female, age 91, right hemisphere 50.9
1838 Male, age 80, right hemisphere 49.6
2482 Female, age 94, left hemisphere 45.0
2466 Female, age 79, unknown 43.0
1829 Male, age 74, unknown 42.2
2647 Male, age 75, left hemisphere 42.2
2489 Female, age 72, unknown 40.9
Septal nuclei
nTPM: 49.3
1960 Male, age 74, unknown 53.8
2629 Female, age 94, right hemisphere 53.2
2009 Female, age 91, both hemispheres 52.3
2031 Female, age 72, unknown 50.3
2059 Female, age 85, both hemispheres 48.3
2199 Male, age 80, right hemisphere 44.1
2394 Male, age 61, left hemisphere 42.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.4
Samples: 246

Max nTPM: 72.1
Min nTPM: 14.9
Std nTPM: 11.5
Median nTPM: 37.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 72.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 68.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 66.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 65.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 64.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 63.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 61.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 60.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 60.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 60.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.0
Samples: 246

Max nTPM: 83.8
Min nTPM: 9.4
Std nTPM: 15.0
Median nTPM: 47.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 83.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 81.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 75.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 74.6
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 73.6
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 72.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 72.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 71.4
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 70.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 69.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 69.3
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Brain - Putamen (basal ganglia)
Average nTPM: 35.3
Samples: 205

Max nTPM: 62.1
Min nTPM: 14.9
Std nTPM: 10.6
Median nTPM: 34.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 62.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 61.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 60.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 59.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 59.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 58.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 58.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 58.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 56.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 55.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 54.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.3
FF:10164-103B2 76 years, female 75.3
Globus pallidus
Scaled Tags Per Million: 58.7
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 32.1
Nucleus accumbens
Scaled Tags Per Million: 119.4
FF:10037-101F1 23-56 years, mixed 119.4
Putamen
Scaled Tags Per Million: 111.3
FF:10176-103C5 60 years, female 111.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 132.2
Pig sample Sample description nTPM
Caudate
nTPM: 131.2
Samples: 4

Max nTPM: 142.7
Min nTPM: 114.1
Sample A Female 114.1
Sample B Female 135.5
Sample C Male 142.7
Sample D Male 132.5
Putamen
nTPM: 124.9
Samples: 4

Max nTPM: 166.9
Min nTPM: 88.3
Sample A Female 88.3
Sample B Female 114.9
Sample C Male 166.9
Sample D Male 129.4
Septum
nTPM: 132.2
Samples: 4

Max nTPM: 148.8
Min nTPM: 119.3
Sample A Female 127.8
Sample B Female 119.3
Sample C Male 132.7
Sample D Male 148.8
Ventral pallidum
nTPM: 114.7
Samples: 4

Max nTPM: 117.3
Min nTPM: 111.7
Sample A Female 116.6
Sample B Female 113.3
Sample C Male 117.3
Sample D Male 111.7

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The Human Protein Atlas

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