MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA:20.2 nTPM
GTEx:388.4 nTPM
FANTOM5:179.3 Scaled Tags Per Million
Mouse:256.7 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
1830 Male, age 51, unknown 25.1
1827 Male, age 72, unknown 21.7
2411 Female, age 72, unknown 21.7
2828 Female, age 72, unknown 19.4
2586 Male, age 75, left hemisphere 18.6
2219 Male, age 76, both hemispheres 18.4
2666 Male, age 74, left hemisphere 18.1
2019 Male, age 18, unknown 18.0
1870 Female, age 42, unknown 17.8
1833 Male, age 53, unknown 16.5
Dorsal raphe nucleus
nTPM: 16.9
2750 Male, age 76, both hemispheres 21.7
1828 Male, age 53, unknown 18.1
2016 Female, age 72, unknown 16.9
2047 Male, age 72, unknown 15.7
2298 Female, age 72, unknown 12.1
Inferior colliculus
nTPM: 20.2
1890 Male, age 53, unknown 23.2
2849 Male, age 72, unknown 20.6
2097 Female, age 72, unknown 20.0
1848 Female, age 42, unknown 16.9
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Pedunculopontine tegmental nucleus
nTPM: 19.0
2338 Male, age 61, both hemispheres 24.7
2334 Male, age 80, both hemispheres 16.3
1921 Female, age 85, both hemispheres 16.0
Periaquaductal grey, anterior
nTPM: 18.0
1947 Male, age 18, unknown 19.8
2502 Female, age 75, unknown 17.8
1795 Male, age 51, unknown 16.4
Periaquaductal grey, dorsal
nTPM: 19.8
2464 Female, age 72, unknown 21.6
1840 Male, age 53, unknown 20.5
1831 Male, age 72, unknown 19.7
2850 Male, age 76, both hemispheres 17.3
Periaquaductal grey, lateral
nTPM: 18.7
2140 Male, age 76, both hemispheres 19.6
2272 Male, age 74, both hemispheres 18.2
2053 Male, age 18, unknown 18.1
Pretectal area
nTPM: 17.9
2316 Male, age 76, right hemisphere 23.9
2407 Male, age 75, both hemispheres 23.2
2667 Female, age 75, unknown 22.1
2273 Male, age 74, both hemispheres 18.1
2825 Male, age 18, unknown 17.5
1816 Male, age 51, unknown 17.4
2224 Female, age 72, unknown 17.3
1817 Female, age 42, unknown 15.8
1815 Male, age 53, unknown 15.7
2007 Male, age 72, unknown 14.0
1944 Female, age 72, unknown 12.4
Red nucleus
nTPM: 18.3
2823 Male, age 76, right hemisphere 24.5
2584 Male, age 75, left hemisphere 21.3
2588 Male, age 74, left hemisphere 21.2
2769 Male, age 72, unknown 20.8
1865 Male, age 51, unknown 18.6
2785 Male, age 18, unknown 18.4
2227 Male, age 72, unknown 17.6
1954 Female, age 42, unknown 16.7
1821 Female, age 72, unknown 16.4
1904 Male, age 53, unknown 15.8
2725 Female, age 75, unknown 14.3
2503 Female, age 72, unknown 13.5
Substantia nigra
nTPM: 19.6
2241 Male, age 72, unknown 24.5
2699 Male, age 18, unknown 22.8
2665 Male, age 74, both hemispheres 20.0
1851 Male, age 51, unknown 19.6
2590 Female, age 75, unknown 19.1
2583 Male, age 75, right hemisphere 18.7
1916 Female, age 42, unknown 18.4
2409 Female, age 72, unknown 17.8
1941 Male, age 53, unknown 17.6
1889 Female, age 72, unknown 17.0
Superior colliculus
nTPM: 18.7
2087 Female, age 72, unknown 23.6
1913 Female, age 42, unknown 23.2
2664 Male, age 75, both hemispheres 20.3
1895 Male, age 76, right hemisphere 19.7
2668 Female, age 75, unknown 18.9
2587 Male, age 74, left hemisphere 18.8
1796 Male, age 53, unknown 17.1
2261 Male, age 18, unknown 15.4
1995 Male, age 72, unknown 15.2
1839 Male, age 51, unknown 15.1
Ventral tegmental area
nTPM: 16.0
2021 Male, age 53, unknown 20.9
1942 Male, age 51, unknown 15.9
1915 Female, age 42, unknown 15.8
2218 Male, age 76, both hemispheres 15.4
2223 Female, age 72, unknown 14.6
2410 Female, age 72, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 388.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 388.4
Samples: 139

Max nTPM: 928.4
Min nTPM: 152.5
Std nTPM: 122.3
Median nTPM: 367.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 928.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 849.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 682.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 674.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 632.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 619.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 590.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 575.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 567.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 566.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 561.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 179.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 179.3
FF:10158-103A5 76 years, female 179.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 256.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 256.7
Samples: 4

Max nTPM: 287.3
Min nTPM: 228.1
Sample A Male 287.3
Sample B Male 257.0
Sample C Female 228.1
Sample D Female 254.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
73716566 Antisense, RP_051206_03_C11, Mouse strain C57BL/6J (56 days, male) 1.3

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