We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PAQR8
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PAQR8
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:102.8 nTPM
HPA:102.8 nTPM
GTEx:145.9 nTPM
FANTOM5:277.6 Scaled Tags Per Million
Pig:74.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 102.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 93.1
1981 Female, age 72, midline 104.3
2048 Male, age 55, midline 95.5
2816 Male, age 47, midline 94.1
2194 Female, age 79, both hemispheres 89.6
2565 Male, age 75, midline 82.2
Cervical spinal cord, dorsal horn
nTPM: 95.3
2296 Male, age 66, both hemispheres 135.5
2173 Female, age 72, unknown 119.9
2069 Male, age 47, both hemispheres 95.9
1877 Male, age 55, unknown 81.4
2297 Male, age 75, both hemispheres 71.8
2721 Male, age 90, both hemispheres 67.4
Cervical spinal cord, ventral horn
nTPM: 102.8
2480 Male, age 75, both hemispheres 111.0
2098 Female, age 72, unknown 109.3
2068 Male, age 55, unknown 103.2
2295 Male, age 66, both hemispheres 102.5
2820 Female, age 79, both hemispheres 95.6
2809 Male, age 90, both hemispheres 95.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 145.9
Samples: 159

Max nTPM: 309.7
Min nTPM: 40.1
Std nTPM: 51.6
Median nTPM: 143.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 309.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 283.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 262.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 260.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 247.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 245.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 242.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 233.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 232.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 231.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 224.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 223.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 217.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 216.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 214.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 212.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 212.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 212.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 207.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 207.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 202.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 201.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 200.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 199.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 198.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 198.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 197.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 195.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 194.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 193.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 189.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 188.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 187.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 187.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 186.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 186.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 186.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 185.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 185.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 184.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 184.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 181.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 180.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 176.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 174.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 173.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 173.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 173.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 172.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 170.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 167.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 167.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 167.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 166.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 162.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 161.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 161.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 160.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 160.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 158.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 157.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 157.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 157.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 157.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 156.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 156.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 153.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 153.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 152.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 151.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 151.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 150.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 149.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 149.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 146.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 146.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 145.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 144.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 143.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 143.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 142.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 142.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 140.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 139.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 139.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 138.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 138.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 136.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 136.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 135.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 135.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 134.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 132.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 129.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 128.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 128.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 127.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 127.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 126.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 126.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 125.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 125.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 123.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 123.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 123.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 122.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 122.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 122.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 122.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 119.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 119.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 119.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 117.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 115.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 112.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 110.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 110.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 108.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 108.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 107.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 107.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 107.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 104.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 104.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 103.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 99.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 97.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 97.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 97.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 96.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 96.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 95.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 95.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 95.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 90.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 89.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 87.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 87.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 84.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 84.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 83.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 83.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 82.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 79.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 79.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 78.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 71.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 66.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 64.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 62.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 62.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 57.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 57.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 50.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 47.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 44.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 40.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 277.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 277.6
FF:10181-103D1 60 years, female 322.8
FF:10159-103A6 76 years, female 232.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 56.0
Samples: 4

Max nTPM: 62.2
Min nTPM: 46.4
Sample A Female 46.4
Sample B Female 61.2
Sample C Male 54.0
Sample D Male 62.2
Ventral spinal cord
nTPM: 74.4
Samples: 4

Max nTPM: 79.4
Min nTPM: 69.7
Sample A Female 71.0
Sample B Female 79.4
Sample C Male 69.7
Sample D Male 77.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.