HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.4 nTPM
HPA:74.4 nTPM
GTEx:54.3 nTPM
FANTOM5:153.4 Scaled Tags Per Million
Pig:40.5 nTPM
Mouse:79.4 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 74.4
Sample id Sample description nTPM
Hippocampus
nTPM: 73.3
2529 Female, age 94, left hemisphere 77.5
1911 Female, age 85, right hemisphere 76.1
1855 Male, age 76, left hemisphere 75.5
2148 Female, age 91, left hemisphere 73.5
2621 Female, age 67, right hemisphere 68.8
1898 Male, age 80, left hemisphere 68.5
Dentate gyrus
nTPM: 69.3
2528 Male, age 74, both hemispheres 83.2
2530 Female, age 94, left hemisphere 73.7
2246 Female, age 85, both hemispheres 67.9
2010 Male, age 76, both hemispheres 66.2
2531 Female, age 67, both hemispheres 64.2
1927 Female, age 91, both hemispheres 60.6
Entorhinal gyrus
nTPM: 66.8
2117 Female, age 91, right hemisphere 84.6
1938 Female, age 85, left hemisphere 69.1
2764 Male, age 80, right hemisphere 66.9
2686 Male, age 75, right hemisphere 64.6
1787 Male, age 76, left hemisphere 60.1
2613 Female, age 94, left hemisphere 55.4
Hippocampus, CA1
nTPM: 65.8
2527 Male, age 74, both hemispheres 77.5
1873 Female, age 85, both hemispheres 70.3
2082 Female, age 91, right hemisphere 65.5
2045 Male, age 76, both hemispheres 58.3
2749 Male, age 80, left hemisphere 57.4
Hippocampus, CA2
nTPM: 69.8
2249 Male, age 74, both hemispheres 76.6
1963 Male, age 80, left hemisphere 72.5
2113 Female, age 91, right hemisphere 70.9
2437 Female, age 94, left hemisphere 70.2
1892 Male, age 76, both hemispheres 64.2
1940 Female, age 85, left hemisphere 64.2
Hippocampus, CA3
nTPM: 65.4
1891 Female, age 85, both hemispheres 74.6
2861 Female, age 67, both hemispheres 70.6
2436 Male, age 74, both hemispheres 65.3
1867 Male, age 76, both hemispheres 64.7
2620 Female, age 94, left hemisphere 62.8
2137 Male, age 80, left hemisphere 54.3
Parahippocampal cortex
nTPM: 65.1
2692 Male, age 74, both hemispheres 81.3
1933 Female, age 85, both hemispheres 67.9
2532 Female, age 72, left hemisphere 67.7
2622 Female, age 67, right hemisphere 64.7
1990 Female, age 91, right hemisphere 64.4
2245 Female, age 91, both hemispheres 63.7
2693 Female, age 94, both hemispheres 61.5
2250 Female, age 67, right hemisphere 60.3
1850 Male, age 80, both hemispheres 60.2
2018 Male, age 76, both hemispheres 59.5
Perirhinal gyrus
nTPM: 58.1
2521 Female, age 94, right hemisphere 61.5
1794 Male, age 80, right hemisphere 59.6
2848 Male, age 76, right hemisphere 56.6
1841 Female, age 85, right hemisphere 56.5
1847 Female, age 91, left hemisphere 56.5
Subiculum
nTPM: 74.4
2042 Male, age 76, both hemispheres 77.2
2729 Female, age 91, right hemisphere 76.8
2619 Male, age 74, both hemispheres 76.3
1901 Male, age 80, both hemispheres 74.2
2438 Female, age 94, left hemisphere 71.6
1977 Female, age 85, both hemispheres 70.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 54.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 54.3
Samples: 197

Max nTPM: 108.6
Min nTPM: 9.3
Std nTPM: 20.6
Median nTPM: 51.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 108.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 106.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 106.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 105.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 99.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 95.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 95.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 95.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 93.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 92.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 90.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 153.4
FF:10153-102I9 76 years, female 185.5
FF:10169-103B7 60 years, female 121.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 34.1
Samples: 4

Max nTPM: 39.8
Min nTPM: 22.6
Sample A Female 36.0
Sample B Female 38.0
Sample C Male 39.8
Sample D Male 22.6
Entorhinal cortex
nTPM: 30.5
Samples: 4

Max nTPM: 35.1
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 35.1
Sample C Male 33.6
Sample D Male 29.5
Subiculum
nTPM: 32.6
Samples: 4

Max nTPM: 37.6
Min nTPM: 26.0
Sample A Female 32.2
Sample B Female 37.6
Sample C Male 34.7
Sample D Male 26.0
Ventral hippocampus
nTPM: 40.5
Samples: 4

Max nTPM: 53.8
Min nTPM: 34.4
Sample A Female 37.5
Sample B Female 36.3
Sample C Male 53.8
Sample D Male 34.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 79.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 79.5
Samples: 4

Max nTPM: 99.3
Min nTPM: 63.5
Sample A Male 74.9
Sample B Male 63.5
Sample C Female 99.3
Sample D Female 80.1
Hippocampal formation
nTPM: 76.9
Samples: 4

Max nTPM: 83.3
Min nTPM: 67.9
Sample A Male 74.8
Sample B Male 67.9
Sample C Female 83.3
Sample D Female 81.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69236712 Antisense, RP_050331_01_A02, Mouse strain C57BL/6J (56 days, male) 1.2
74724530 Antisense, RP_060220_04_A02, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.