BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:57.4 nTPM
FANTOM5:143.2 Scaled Tags Per Million
Pig:88.7 nTPM
Mouse:176.2 nTPM
Allen mouse:5.6 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB010104
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.8
2481 Female, age 94, left hemisphere 74.7
1857 Female, age 85, left hemisphere 64.9
2290 Female, age 72, unknown 61.4
2289 Male, age 61, right hemisphere 55.4
2288 Male, age 75, left hemisphere 55.0
1854 Male, age 80, left hemisphere 54.1
2846 Female, age 79, unknown 46.8
1781 Male, age 74, unknown 42.3
Claustrum
nTPM: 33.7
2196 Female, age 79, unknown 40.5
2198 Male, age 80, both hemispheres 35.1
2491 Male, age 75, both hemispheres 34.5
2645 Female, age 72, unknown 34.1
2392 Female, age 94, both hemispheres 33.7
2568 Male, age 61, both hemispheres 33.7
2284 Female, age 91, both hemispheres 32.2
2292 Female, age 85, both hemispheres 30.0
1956 Male, age 74, unknown 29.0
Globus pallidus, externus
nTPM: 62.7
2646 Male, age 61, right hemisphere 88.4
1996 Male, age 80, right hemisphere 79.1
2772 Female, age 79, unknown 57.7
2567 Female, age 72, unknown 48.4
2395 Male, age 75, both hemispheres 39.9
Globus pallidus, internus
nTPM: 58.0
2483 Female, age 94, right hemisphere 84.3
2037 Male, age 80, right hemisphere 71.8
1818 Male, age 74, unknown 65.7
2287 Male, age 75, right hemisphere 60.3
2778 Female, age 91, both hemispheres 45.0
2566 Female, age 72, unknown 39.7
2111 Female, age 85, right hemisphere 39.4
Nucleus accumbens
nTPM: 51.2
2286 Male, age 75, left hemisphere 62.7
1806 Female, age 85, left hemisphere 61.5
2698 Female, age 72, unknown 51.5
1856 Female, age 91, right hemisphere 48.8
2824 Male, age 61, right hemisphere 48.0
2391 Female, age 94, left hemisphere 47.3
1783 Male, age 74, unknown 46.4
2732 Male, age 80, right hemisphere 43.7
Nucleus basalis of Meynert
nTPM: 59.3
2569 Male, age 61, both hemispheres 96.1
2484 Female, age 94, left hemisphere 53.2
2393 Male, age 80, right hemisphere 44.9
2821 Male, age 75, both hemispheres 43.1
Nucleus of the diagonal band
nTPM: 45.7
1979 Male, age 74, unknown 57.1
2195 Female, age 85, both hemispheres 51.2
2775 Male, age 80, right hemisphere 42.1
1812 Female, age 91, both hemispheres 41.7
2029 Male, age 61, right hemisphere 36.7
Olfactory tubercle
nTPM: 43.9
1846 Male, age 80, right hemisphere 49.9
2856 Male, age 75, right hemisphere 46.9
2487 Female, age 94, left hemisphere 41.4
1998 Female, age 91, both hemispheres 37.5
Putamen
nTPM: 47.9
2482 Female, age 94, left hemisphere 61.6
2489 Female, age 72, unknown 50.6
1838 Male, age 80, right hemisphere 47.6
2647 Male, age 75, left hemisphere 45.3
1937 Female, age 91, right hemisphere 44.6
2466 Female, age 79, unknown 43.7
1829 Male, age 74, unknown 42.0
Septal nuclei
nTPM: 48.7
2059 Female, age 85, both hemispheres 63.3
2199 Male, age 80, right hemisphere 57.4
1960 Male, age 74, unknown 48.5
2394 Male, age 61, left hemisphere 47.3
2031 Female, age 72, unknown 42.4
2629 Female, age 94, right hemisphere 41.5
2009 Female, age 91, both hemispheres 40.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.4
Samples: 246

Max nTPM: 159.8
Min nTPM: 8.4
Std nTPM: 24.7
Median nTPM: 53.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 159.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 147.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 131.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 128.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 118.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 116.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 115.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 114.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 111.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 111.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 108.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.1
Samples: 246

Max nTPM: 179.7
Min nTPM: 15.5
Std nTPM: 28.8
Median nTPM: 48.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 179.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 170.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 152.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 140.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 135.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 128.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 127.7
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 123.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 121.6
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 120.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 119.9
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Brain - Putamen (basal ganglia)
Average nTPM: 55.2
Samples: 205

Max nTPM: 130.8
Min nTPM: 8.4
Std nTPM: 25.1
Median nTPM: 51.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 130.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 128.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 119.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 115.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 114.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 114.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 110.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 107.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 106.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 106.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 106.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 143.2
FF:10164-103B2 76 years, female 143.2
Globus pallidus
Scaled Tags Per Million: 123.6
FF:10175-103C4 60 years, female 142.8
FF:10161-103A8 76 years, female 104.4
Nucleus accumbens
Scaled Tags Per Million: 99.0
FF:10037-101F1 23-56 years, mixed 99.0
Putamen
Scaled Tags Per Million: 123.4
FF:10176-103C5 60 years, female 123.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 88.7
Pig sample Sample description nTPM
Caudate
nTPM: 83.8
Samples: 4

Max nTPM: 102.1
Min nTPM: 70.2
Sample A Female 72.0
Sample B Female 90.9
Sample C Male 102.1
Sample D Male 70.2
Putamen
nTPM: 88.7
Samples: 4

Max nTPM: 100.2
Min nTPM: 73.6
Sample A Female 95.2
Sample B Female 73.6
Sample C Male 100.2
Sample D Male 85.8
Septum
nTPM: 77.5
Samples: 4

Max nTPM: 81.6
Min nTPM: 73.9
Sample A Female 73.9
Sample B Female 74.0
Sample C Male 81.6
Sample D Male 80.4
Ventral pallidum
nTPM: 78.1
Samples: 4

Max nTPM: 95.8
Min nTPM: 61.4
Sample A Female 66.1
Sample B Female 88.9
Sample C Male 95.8
Sample D Male 61.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 176.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 171.9
Samples: 4

Max nTPM: 195.2
Min nTPM: 157.3
Sample A Male 157.3
Sample B Male 166.4
Sample C Female 168.8
Sample D Female 195.2
Septum
nTPM: 176.2
Samples: 4

Max nTPM: 223.2
Min nTPM: 136.5
Sample A Male 136.5
Sample B Male 223.2
Sample C Female 169.5
Sample D Female 175.7
Ventral forebrain
nTPM: 153.9
Samples: 4

Max nTPM: 173.4
Min nTPM: 138.1
Sample A Male 145.8
Sample B Male 138.1
Sample C Female 173.4
Sample D Female 158.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.6
69012705 Antisense, RP_050309_01_C09, Mouse strain C57BL/6J (56 days, male) 6.5
75043142 Antisense, RP_060220_02_G03, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 4.6
69012705 Antisense, RP_050309_01_C09, Mouse strain C57BL/6J (56 days, male) 5.5
75043142 Antisense, RP_060220_02_G03, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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