MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.0 nTPM
HPA:73.0 nTPM
GTEx:53.9 nTPM
FANTOM5:85.2 Scaled Tags Per Million
Pig:116.5 nTPM
Mouse:107.0 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.9
2586 Male, age 75, left hemisphere 66.7
2828 Female, age 72, unknown 65.9
2219 Male, age 76, both hemispheres 59.2
2666 Male, age 74, left hemisphere 56.2
1833 Male, age 53, unknown 54.0
1827 Male, age 72, unknown 53.9
1870 Female, age 42, unknown 53.7
2411 Female, age 72, unknown 52.8
1830 Male, age 51, unknown 49.6
2019 Male, age 18, unknown 37.1
Dorsal raphe nucleus
nTPM: 73.0
2047 Male, age 72, unknown 91.7
2016 Female, age 72, unknown 73.9
1828 Male, age 53, unknown 73.6
2298 Female, age 72, unknown 67.5
2750 Male, age 76, both hemispheres 58.1
Inferior colliculus
nTPM: 71.7
1848 Female, age 42, unknown 82.9
1890 Male, age 53, unknown 69.3
2849 Male, age 72, unknown 67.5
2097 Female, age 72, unknown 67.1
Median raphe nucleus
nTPM: 57.0
2220 Male, age 76, midline 57.0
Pedunculopontine tegmental nucleus
nTPM: 60.7
1921 Female, age 85, both hemispheres 66.9
2334 Male, age 80, both hemispheres 63.7
2338 Male, age 61, both hemispheres 51.4
Periaquaductal grey, anterior
nTPM: 60.0
1947 Male, age 18, unknown 65.8
2502 Female, age 75, unknown 57.2
1795 Male, age 51, unknown 57.0
Periaquaductal grey, dorsal
nTPM: 59.8
1840 Male, age 53, unknown 71.9
2464 Female, age 72, unknown 63.8
2850 Male, age 76, both hemispheres 57.2
1831 Male, age 72, unknown 46.2
Periaquaductal grey, lateral
nTPM: 55.2
2053 Male, age 18, unknown 63.9
2140 Male, age 76, both hemispheres 58.6
2272 Male, age 74, both hemispheres 42.9
Pretectal area
nTPM: 55.4
2825 Male, age 18, unknown 65.5
1817 Female, age 42, unknown 65.3
1944 Female, age 72, unknown 64.1
2224 Female, age 72, unknown 63.7
1816 Male, age 51, unknown 58.9
2667 Female, age 75, unknown 57.4
2316 Male, age 76, right hemisphere 53.8
1815 Male, age 53, unknown 51.7
2007 Male, age 72, unknown 45.1
2273 Male, age 74, both hemispheres 42.5
2407 Male, age 75, both hemispheres 41.3
Red nucleus
nTPM: 60.1
2503 Female, age 72, unknown 70.4
2227 Male, age 72, unknown 69.5
2769 Male, age 72, unknown 68.3
1954 Female, age 42, unknown 66.0
1821 Female, age 72, unknown 65.8
2823 Male, age 76, right hemisphere 64.5
1904 Male, age 53, unknown 61.4
2588 Male, age 74, left hemisphere 59.4
2725 Female, age 75, unknown 58.6
1865 Male, age 51, unknown 55.7
2584 Male, age 75, left hemisphere 42.0
2785 Male, age 18, unknown 39.2
Substantia nigra
nTPM: 67.8
2699 Male, age 18, unknown 92.7
1916 Female, age 42, unknown 83.8
2665 Male, age 74, both hemispheres 72.8
2241 Male, age 72, unknown 68.5
1851 Male, age 51, unknown 66.7
1889 Female, age 72, unknown 64.6
2409 Female, age 72, unknown 63.6
2590 Female, age 75, unknown 58.4
2583 Male, age 75, right hemisphere 53.3
1941 Male, age 53, unknown 53.2
Superior colliculus
nTPM: 53.6
2087 Female, age 72, unknown 62.8
2668 Female, age 75, unknown 59.7
2261 Male, age 18, unknown 59.1
1796 Male, age 53, unknown 57.9
1839 Male, age 51, unknown 57.8
1995 Male, age 72, unknown 50.4
2587 Male, age 74, left hemisphere 49.4
1895 Male, age 76, right hemisphere 47.6
2664 Male, age 75, both hemispheres 46.1
1913 Female, age 42, unknown 45.1
Ventral tegmental area
nTPM: 62.3
2218 Male, age 76, both hemispheres 69.6
2410 Female, age 72, unknown 66.1
1915 Female, age 42, unknown 64.8
1942 Male, age 51, unknown 63.3
2021 Male, age 53, unknown 59.0
2223 Female, age 72, unknown 51.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.9
Samples: 139

Max nTPM: 231.3
Min nTPM: 4.8
Std nTPM: 35.4
Median nTPM: 44.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 231.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 224.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 154.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 138.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 132.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 132.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 129.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 127.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 121.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 111.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 110.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.2
FF:10158-103A5 76 years, female 85.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 116.5
Pig sample Sample description nTPM
Midbrain
nTPM: 116.5
Samples: 4

Max nTPM: 132.8
Min nTPM: 87.2
Sample A Female 132.8
Sample B Female 127.7
Sample C Male 118.1
Sample D Male 87.2
Periaqueductal gray
nTPM: 115.0
Samples: 3

Max nTPM: 125.3
Min nTPM: 100.3
Sample B Female 125.3
Sample C Male 119.3
Sample D Male 100.3
Substantia nigra
nTPM: 113.3
Samples: 4

Max nTPM: 129.1
Min nTPM: 95.3
Sample A Female 129.1
Sample B Female 95.3
Sample C Male 118.1
Sample D Male 110.8
Superior colliculi
nTPM: 98.2
Samples: 4

Max nTPM: 117.9
Min nTPM: 54.7
Sample A Female 117.9
Sample B Female 54.7
Sample C Male 104.8
Sample D Male 115.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 107.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.0
Samples: 4

Max nTPM: 110.2
Min nTPM: 105.5
Sample A Male 110.2
Sample B Male 105.7
Sample C Female 105.5
Sample D Female 106.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69012705 Antisense, RP_050309_01_C09, Mouse strain C57BL/6J (56 days, male) 4.7
75043142 Antisense, RP_060220_02_G03, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.