MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:287.9 nTPM
HPA:287.9 nTPM
GTEx:326.9 nTPM
FANTOM5:147.3 Scaled Tags Per Million
Mouse:363.7 nTPM
Allen mouse:20.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 287.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 263.7
2586 Male, age 75, left hemisphere 369.5
2828 Female, age 72, unknown 283.7
2219 Male, age 76, both hemispheres 278.5
1827 Male, age 72, unknown 267.1
2019 Male, age 18, unknown 262.7
2666 Male, age 74, left hemisphere 255.1
2411 Female, age 72, unknown 249.2
1833 Male, age 53, unknown 230.3
1830 Male, age 51, unknown 221.2
1870 Female, age 42, unknown 219.6
Dorsal raphe nucleus
nTPM: 249.4
2047 Male, age 72, unknown 268.5
2298 Female, age 72, unknown 254.7
1828 Male, age 53, unknown 253.3
2750 Male, age 76, both hemispheres 251.7
2016 Female, age 72, unknown 218.5
Inferior colliculus
nTPM: 228.3
1848 Female, age 42, unknown 234.8
1890 Male, age 53, unknown 230.5
2097 Female, age 72, unknown 225.3
2849 Male, age 72, unknown 222.8
Median raphe nucleus
nTPM: 260.4
2220 Male, age 76, midline 260.4
Pedunculopontine tegmental nucleus
nTPM: 231.2
1921 Female, age 85, both hemispheres 250.2
2334 Male, age 80, both hemispheres 242.8
2338 Male, age 61, both hemispheres 200.7
Periaquaductal grey, anterior
nTPM: 283.3
2502 Female, age 75, unknown 289.1
1795 Male, age 51, unknown 281.2
1947 Male, age 18, unknown 279.7
Periaquaductal grey, dorsal
nTPM: 224.2
1831 Male, age 72, unknown 232.8
1840 Male, age 53, unknown 229.0
2464 Female, age 72, unknown 228.6
2850 Male, age 76, both hemispheres 206.3
Periaquaductal grey, lateral
nTPM: 204.8
2053 Male, age 18, unknown 214.5
2140 Male, age 76, both hemispheres 204.9
2272 Male, age 74, both hemispheres 195.1
Pretectal area
nTPM: 260.0
1817 Female, age 42, unknown 322.4
1816 Male, age 51, unknown 321.2
2007 Male, age 72, unknown 300.9
1944 Female, age 72, unknown 287.5
1815 Male, age 53, unknown 277.4
2667 Female, age 75, unknown 262.2
2825 Male, age 18, unknown 238.1
2407 Male, age 75, both hemispheres 235.6
2224 Female, age 72, unknown 221.6
2316 Male, age 76, right hemisphere 197.4
2273 Male, age 74, both hemispheres 196.0
Red nucleus
nTPM: 252.2
2588 Male, age 74, left hemisphere 285.5
2584 Male, age 75, left hemisphere 279.9
1821 Female, age 72, unknown 259.8
2725 Female, age 75, unknown 257.3
2785 Male, age 18, unknown 252.3
2503 Female, age 72, unknown 249.8
1954 Female, age 42, unknown 248.2
2769 Male, age 72, unknown 243.6
2227 Male, age 72, unknown 239.8
2823 Male, age 76, right hemisphere 238.4
1865 Male, age 51, unknown 236.6
1904 Male, age 53, unknown 235.8
Substantia nigra
nTPM: 287.9
2665 Male, age 74, both hemispheres 338.9
1916 Female, age 42, unknown 335.8
1851 Male, age 51, unknown 307.5
1941 Male, age 53, unknown 297.6
1889 Female, age 72, unknown 286.1
2583 Male, age 75, right hemisphere 273.5
2699 Male, age 18, unknown 270.8
2241 Male, age 72, unknown 267.3
2590 Female, age 75, unknown 250.8
2409 Female, age 72, unknown 250.6
Superior colliculus
nTPM: 249.6
2664 Male, age 75, both hemispheres 298.8
2087 Female, age 72, unknown 278.0
1796 Male, age 53, unknown 270.2
2261 Male, age 18, unknown 262.1
2668 Female, age 75, unknown 260.6
1839 Male, age 51, unknown 236.9
1895 Male, age 76, right hemisphere 232.7
2587 Male, age 74, left hemisphere 227.1
1995 Male, age 72, unknown 216.8
1913 Female, age 42, unknown 212.5
Ventral tegmental area
nTPM: 267.9
2410 Female, age 72, unknown 300.6
2218 Male, age 76, both hemispheres 295.7
1915 Female, age 42, unknown 282.9
1942 Male, age 51, unknown 262.8
2021 Male, age 53, unknown 245.0
2223 Female, age 72, unknown 220.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 326.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 326.9
Samples: 139

Max nTPM: 689.9
Min nTPM: 97.6
Std nTPM: 127.8
Median nTPM: 311.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 689.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 680.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 667.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 634.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 627.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 562.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 559.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 557.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 551.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 535.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 535.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.3
FF:10158-103A5 76 years, female 147.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 363.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 363.7
Samples: 4

Max nTPM: 367.4
Min nTPM: 360.6
Sample A Male 365.5
Sample B Male 360.6
Sample C Female 367.4
Sample D Female 361.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.0
69059973 Antisense, RP_050317_04_H06, Mouse strain C57BL/6J (56 days, male) 20.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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