MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.5 nTPM
HPA:53.5 nTPM
GTEx:48.9 nTPM
FANTOM5:43.0 Scaled Tags Per Million
Pig:22.1 nTPM
Mouse:12.0 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
2586 Male, age 75, left hemisphere 62.7
2828 Female, age 72, unknown 53.9
1827 Male, age 72, unknown 52.4
2666 Male, age 74, left hemisphere 51.5
1870 Female, age 42, unknown 50.1
2411 Female, age 72, unknown 49.4
2019 Male, age 18, unknown 48.9
2219 Male, age 76, both hemispheres 47.8
1830 Male, age 51, unknown 47.2
1833 Male, age 53, unknown 46.6
Dorsal raphe nucleus
nTPM: 49.2
2298 Female, age 72, unknown 51.5
1828 Male, age 53, unknown 49.8
2016 Female, age 72, unknown 49.6
2047 Male, age 72, unknown 48.5
2750 Male, age 76, both hemispheres 46.7
Inferior colliculus
nTPM: 49.5
2097 Female, age 72, unknown 50.9
1848 Female, age 42, unknown 49.7
1890 Male, age 53, unknown 49.1
2849 Male, age 72, unknown 48.4
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Pedunculopontine tegmental nucleus
nTPM: 47.3
2338 Male, age 61, both hemispheres 48.3
2334 Male, age 80, both hemispheres 47.4
1921 Female, age 85, both hemispheres 46.3
Periaquaductal grey, anterior
nTPM: 53.5
2502 Female, age 75, unknown 54.7
1795 Male, age 51, unknown 53.9
1947 Male, age 18, unknown 52.0
Periaquaductal grey, dorsal
nTPM: 48.0
1840 Male, age 53, unknown 49.8
2464 Female, age 72, unknown 48.9
2850 Male, age 76, both hemispheres 47.2
1831 Male, age 72, unknown 45.9
Periaquaductal grey, lateral
nTPM: 48.3
2140 Male, age 76, both hemispheres 48.6
2053 Male, age 18, unknown 48.4
2272 Male, age 74, both hemispheres 47.9
Pretectal area
nTPM: 50.0
1816 Male, age 51, unknown 55.0
2007 Male, age 72, unknown 53.8
1817 Female, age 42, unknown 53.4
1944 Female, age 72, unknown 53.1
2825 Male, age 18, unknown 50.8
1815 Male, age 53, unknown 50.4
2273 Male, age 74, both hemispheres 47.8
2224 Female, age 72, unknown 47.6
2407 Male, age 75, both hemispheres 46.9
2667 Female, age 75, unknown 46.8
2316 Male, age 76, right hemisphere 44.5
Red nucleus
nTPM: 49.8
2503 Female, age 72, unknown 51.3
2584 Male, age 75, left hemisphere 51.3
2588 Male, age 74, left hemisphere 51.2
2227 Male, age 72, unknown 50.9
2769 Male, age 72, unknown 50.8
1954 Female, age 42, unknown 50.6
2785 Male, age 18, unknown 50.5
1904 Male, age 53, unknown 49.8
1865 Male, age 51, unknown 48.8
2725 Female, age 75, unknown 48.6
1821 Female, age 72, unknown 47.9
2823 Male, age 76, right hemisphere 46.1
Substantia nigra
nTPM: 50.6
1916 Female, age 42, unknown 53.2
1851 Male, age 51, unknown 52.6
2583 Male, age 75, right hemisphere 52.3
2590 Female, age 75, unknown 51.2
2665 Male, age 74, both hemispheres 50.7
1941 Male, age 53, unknown 50.0
2699 Male, age 18, unknown 49.9
1889 Female, age 72, unknown 49.6
2241 Male, age 72, unknown 48.7
2409 Female, age 72, unknown 48.1
Superior colliculus
nTPM: 50.5
2664 Male, age 75, both hemispheres 55.1
2668 Female, age 75, unknown 53.3
1796 Male, age 53, unknown 53.2
2261 Male, age 18, unknown 52.6
2087 Female, age 72, unknown 52.0
1995 Male, age 72, unknown 48.8
1913 Female, age 42, unknown 48.7
2587 Male, age 74, left hemisphere 47.3
1839 Male, age 51, unknown 46.9
1895 Male, age 76, right hemisphere 46.7
Ventral tegmental area
nTPM: 50.4
1915 Female, age 42, unknown 52.1
1942 Male, age 51, unknown 51.6
2410 Female, age 72, unknown 51.0
2218 Male, age 76, both hemispheres 49.8
2021 Male, age 53, unknown 49.7
2223 Female, age 72, unknown 48.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.9
Samples: 139

Max nTPM: 82.9
Min nTPM: 26.1
Std nTPM: 11.9
Median nTPM: 47.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 82.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 79.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 78.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 75.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 74.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 73.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 71.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 71.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 71.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 70.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 69.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.0
FF:10158-103A5 76 years, female 43.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.1
Pig sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 27.7
Min nTPM: 19.2
Sample A Female 27.7
Sample B Female 19.2
Sample C Male 21.8
Sample D Male 19.8
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 20.5
Min nTPM: 17.7
Sample B Female 17.7
Sample C Male 20.5
Sample D Male 18.3
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 23.0
Min nTPM: 19.4
Sample A Female 23.0
Sample B Female 19.4
Sample C Male 21.6
Sample D Male 19.4
Superior colliculi
nTPM: 20.5
Samples: 4

Max nTPM: 23.0
Min nTPM: 18.7
Sample A Female 23.0
Sample B Female 19.1
Sample C Male 18.7
Sample D Male 21.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 13.1
Min nTPM: 10.6
Sample A Male 13.1
Sample B Male 11.6
Sample C Female 10.6
Sample D Female 12.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
71724466 Antisense, RP_050927_03_F03, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.