MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:114.2 nTPM
HPA:114.2 nTPM
GTEx:165.1 nTPM
FANTOM5:89.5 Scaled Tags Per Million
Mouse:47.4 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.3
2666 Male, age 74, left hemisphere 130.7
2828 Female, age 72, unknown 121.9
2586 Male, age 75, left hemisphere 116.0
2019 Male, age 18, unknown 115.5
1827 Male, age 72, unknown 112.1
2219 Male, age 76, both hemispheres 106.4
1870 Female, age 42, unknown 96.9
1833 Male, age 53, unknown 95.0
1830 Male, age 51, unknown 94.4
2411 Female, age 72, unknown 93.7
Dorsal raphe nucleus
nTPM: 104.6
1828 Male, age 53, unknown 118.8
2047 Male, age 72, unknown 109.9
2298 Female, age 72, unknown 102.2
2750 Male, age 76, both hemispheres 97.8
2016 Female, age 72, unknown 94.4
Inferior colliculus
nTPM: 101.7
2849 Male, age 72, unknown 103.8
1848 Female, age 42, unknown 103.3
1890 Male, age 53, unknown 102.3
2097 Female, age 72, unknown 97.5
Median raphe nucleus
nTPM: 103.3
2220 Male, age 76, midline 103.3
Pedunculopontine tegmental nucleus
nTPM: 99.4
2338 Male, age 61, both hemispheres 101.3
2334 Male, age 80, both hemispheres 99.7
1921 Female, age 85, both hemispheres 97.1
Periaquaductal grey, anterior
nTPM: 101.5
1795 Male, age 51, unknown 111.8
1947 Male, age 18, unknown 98.2
2502 Female, age 75, unknown 94.6
Periaquaductal grey, dorsal
nTPM: 96.2
1831 Male, age 72, unknown 97.9
2850 Male, age 76, both hemispheres 97.9
1840 Male, age 53, unknown 94.8
2464 Female, age 72, unknown 94.2
Periaquaductal grey, lateral
nTPM: 93.6
2272 Male, age 74, both hemispheres 97.1
2053 Male, age 18, unknown 95.3
2140 Male, age 76, both hemispheres 88.5
Pretectal area
nTPM: 110.8
1817 Female, age 42, unknown 142.0
1816 Male, age 51, unknown 133.6
2007 Male, age 72, unknown 130.7
1815 Male, age 53, unknown 123.3
1944 Female, age 72, unknown 120.1
2667 Female, age 75, unknown 101.6
2825 Male, age 18, unknown 98.6
2224 Female, age 72, unknown 95.5
2407 Male, age 75, both hemispheres 95.1
2273 Male, age 74, both hemispheres 89.8
2316 Male, age 76, right hemisphere 88.7
Red nucleus
nTPM: 103.7
2588 Male, age 74, left hemisphere 130.3
2785 Male, age 18, unknown 115.3
2584 Male, age 75, left hemisphere 109.9
2725 Female, age 75, unknown 103.8
2503 Female, age 72, unknown 103.6
1821 Female, age 72, unknown 102.4
2823 Male, age 76, right hemisphere 100.6
1865 Male, age 51, unknown 97.7
2769 Male, age 72, unknown 96.5
2227 Male, age 72, unknown 95.9
1954 Female, age 42, unknown 95.5
1904 Male, age 53, unknown 93.3
Substantia nigra
nTPM: 114.2
2665 Male, age 74, both hemispheres 135.5
1916 Female, age 42, unknown 122.2
2583 Male, age 75, right hemisphere 121.2
1889 Female, age 72, unknown 120.1
1851 Male, age 51, unknown 118.7
1941 Male, age 53, unknown 118.3
2409 Female, age 72, unknown 107.5
2699 Male, age 18, unknown 106.5
2241 Male, age 72, unknown 97.6
2590 Female, age 75, unknown 94.1
Superior colliculus
nTPM: 111.4
2668 Female, age 75, unknown 162.8
1796 Male, age 53, unknown 116.3
2087 Female, age 72, unknown 113.3
1913 Female, age 42, unknown 108.8
1995 Male, age 72, unknown 105.7
2261 Male, age 18, unknown 104.1
2664 Male, age 75, both hemispheres 102.6
2587 Male, age 74, left hemisphere 101.3
1895 Male, age 76, right hemisphere 99.9
1839 Male, age 51, unknown 99.6
Ventral tegmental area
nTPM: 105.7
2223 Female, age 72, unknown 117.1
1915 Female, age 42, unknown 114.4
2218 Male, age 76, both hemispheres 105.6
2410 Female, age 72, unknown 102.7
1942 Male, age 51, unknown 99.6
2021 Male, age 53, unknown 95.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 165.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.1
Samples: 139

Max nTPM: 583.0
Min nTPM: 57.5
Std nTPM: 75.6
Median nTPM: 147.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 583.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 422.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 363.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 358.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 357.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 345.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 342.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 337.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 327.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 298.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 275.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.5
FF:10158-103A5 76 years, female 89.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 58.8
Min nTPM: 32.2
Sample A Male 58.8
Sample B Male 43.1
Sample C Female 32.2
Sample D Female 55.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68631948 Antisense, RP_050125_01_D08, Mouse strain C57BL/6J (56 days, male) 4.0
71015816 Antisense, RP_050725_02_H12, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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