BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:25.5 nTPM
FANTOM5:38.8 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:21.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038370
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.7
2846 Female, age 79, unknown 33.0
1781 Male, age 74, unknown 31.4
2290 Female, age 72, unknown 31.4
2288 Male, age 75, left hemisphere 30.8
2481 Female, age 94, left hemisphere 30.1
1854 Male, age 80, left hemisphere 30.0
1857 Female, age 85, left hemisphere 29.9
2289 Male, age 61, right hemisphere 28.7
Claustrum
nTPM: 31.3
1956 Male, age 74, unknown 33.5
2491 Male, age 75, both hemispheres 33.1
2196 Female, age 79, unknown 32.2
2198 Male, age 80, both hemispheres 32.2
2292 Female, age 85, both hemispheres 30.9
2568 Male, age 61, both hemispheres 30.7
2284 Female, age 91, both hemispheres 30.4
2392 Female, age 94, both hemispheres 29.8
2645 Female, age 72, unknown 28.6
Globus pallidus, externus
nTPM: 33.5
1996 Male, age 80, right hemisphere 35.7
2567 Female, age 72, unknown 35.7
2646 Male, age 61, right hemisphere 33.7
2772 Female, age 79, unknown 31.7
2395 Male, age 75, both hemispheres 30.8
Globus pallidus, internus
nTPM: 34.3
2287 Male, age 75, right hemisphere 36.1
2483 Female, age 94, right hemisphere 35.9
2566 Female, age 72, unknown 35.8
2778 Female, age 91, both hemispheres 34.6
2037 Male, age 80, right hemisphere 33.2
2111 Female, age 85, right hemisphere 33.0
1818 Male, age 74, unknown 31.4
Nucleus accumbens
nTPM: 30.5
2698 Female, age 72, unknown 33.1
2391 Female, age 94, left hemisphere 32.1
2732 Male, age 80, right hemisphere 31.6
1856 Female, age 91, right hemisphere 30.7
1783 Male, age 74, unknown 29.7
2286 Male, age 75, left hemisphere 29.1
1806 Female, age 85, left hemisphere 29.0
2824 Male, age 61, right hemisphere 29.0
Nucleus basalis of Meynert
nTPM: 32.3
2569 Male, age 61, both hemispheres 34.0
2484 Female, age 94, left hemisphere 32.4
2821 Male, age 75, both hemispheres 32.3
2393 Male, age 80, right hemisphere 30.4
Nucleus of the diagonal band
nTPM: 29.0
1979 Male, age 74, unknown 31.6
2195 Female, age 85, both hemispheres 30.1
2775 Male, age 80, right hemisphere 28.1
2029 Male, age 61, right hemisphere 27.6
1812 Female, age 91, both hemispheres 27.5
Olfactory tubercle
nTPM: 29.4
1998 Female, age 91, both hemispheres 29.7
1846 Male, age 80, right hemisphere 29.4
2856 Male, age 75, right hemisphere 29.3
2487 Female, age 94, left hemisphere 29.2
Putamen
nTPM: 31.1
2489 Female, age 72, unknown 33.7
2482 Female, age 94, left hemisphere 32.0
2647 Male, age 75, left hemisphere 31.6
1838 Male, age 80, right hemisphere 30.7
1937 Female, age 91, right hemisphere 30.3
2466 Female, age 79, unknown 29.8
1829 Male, age 74, unknown 29.5
Septal nuclei
nTPM: 29.2
2199 Male, age 80, right hemisphere 31.3
1960 Male, age 74, unknown 29.8
2629 Female, age 94, right hemisphere 29.6
2394 Male, age 61, left hemisphere 29.5
2009 Female, age 91, both hemispheres 28.3
2059 Female, age 85, both hemispheres 28.1
2031 Female, age 72, unknown 27.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.5
Samples: 246

Max nTPM: 40.9
Min nTPM: 13.9
Std nTPM: 5.0
Median nTPM: 22.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 40.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 39.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 39.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 37.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 37.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 37.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 36.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 35.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 35.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 35.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.2
Samples: 246

Max nTPM: 39.9
Min nTPM: 13.8
Std nTPM: 4.4
Median nTPM: 22.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 39.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 36.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 34.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 34.2
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 34.2
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 33.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 32.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 32.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 32.4
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 32.3
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 32.2
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Brain - Putamen (basal ganglia)
Average nTPM: 25.5
Samples: 205

Max nTPM: 44.8
Min nTPM: 14.2
Std nTPM: 6.0
Median nTPM: 24.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 44.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 42.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 42.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 41.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 41.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 39.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 39.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 38.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 37.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 37.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 36.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.3
FF:10164-103B2 76 years, female 33.3
Globus pallidus
Scaled Tags Per Million: 28.8
FF:10161-103A8 76 years, female 31.6
FF:10175-103C4 60 years, female 26.0
Nucleus accumbens
Scaled Tags Per Million: 36.0
FF:10037-101F1 23-56 years, mixed 36.0
Putamen
Scaled Tags Per Million: 38.8
FF:10176-103C5 60 years, female 38.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.5
Pig sample Sample description nTPM
Caudate
nTPM: 9.9
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.3
Sample A Female 9.9
Sample B Female 10.5
Sample C Male 9.8
Sample D Male 9.3
Putamen
nTPM: 10.8
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.9
Sample A Female 10.8
Sample B Female 9.9
Sample C Male 10.6
Sample D Male 11.9
Septum
nTPM: 11.5
Samples: 4

Max nTPM: 12.6
Min nTPM: 10.2
Sample A Female 12.6
Sample B Female 10.7
Sample C Male 12.3
Sample D Male 10.2
Ventral pallidum
nTPM: 10.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.4
Sample A Female 11.6
Sample B Female 10.7
Sample C Male 10.5
Sample D Male 10.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 21.4
Samples: 4

Max nTPM: 22.5
Min nTPM: 20.2
Sample A Male 22.5
Sample B Male 21.3
Sample C Female 20.2
Sample D Female 21.5
Septum
nTPM: 20.6
Samples: 4

Max nTPM: 21.8
Min nTPM: 19.1
Sample A Male 19.1
Sample B Male 21.8
Sample C Female 21.3
Sample D Female 20.2
Ventral forebrain
nTPM: 19.7
Samples: 4

Max nTPM: 23.3
Min nTPM: 17.1
Sample A Male 23.3
Sample B Male 17.1
Sample C Female 20.8
Sample D Female 17.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
2203 Antisense, RP_040604_01_C01, Mouse strain C57BL/6J (56 days, male) 0.1
2204 Antisense, RP_040604_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
2203 Antisense, RP_040604_01_C01, Mouse strain C57BL/6J (56 days, male) 0.1
2204 Antisense, RP_040604_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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