MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:242.7 nTPM
HPA:242.7 nTPM
GTEx:287.2 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:301.0 nTPM
Mouse:588.4 nTPM
Allen mouse:22.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 242.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 222.6
2411 Female, age 72, unknown 245.2
1827 Male, age 72, unknown 240.6
2586 Male, age 75, left hemisphere 237.5
2019 Male, age 18, unknown 229.9
2828 Female, age 72, unknown 222.6
1870 Female, age 42, unknown 217.8
2219 Male, age 76, both hemispheres 213.2
2666 Male, age 74, left hemisphere 210.5
1833 Male, age 53, unknown 208.6
1830 Male, age 51, unknown 199.6
Dorsal raphe nucleus
nTPM: 235.4
2298 Female, age 72, unknown 274.5
2047 Male, age 72, unknown 241.1
1828 Male, age 53, unknown 231.2
2750 Male, age 76, both hemispheres 225.0
2016 Female, age 72, unknown 204.8
Inferior colliculus
nTPM: 233.5
2097 Female, age 72, unknown 271.9
1890 Male, age 53, unknown 233.8
1848 Female, age 42, unknown 226.5
2849 Male, age 72, unknown 201.9
Median raphe nucleus
nTPM: 236.9
2220 Male, age 76, midline 236.9
Pedunculopontine tegmental nucleus
nTPM: 232.6
1921 Female, age 85, both hemispheres 248.8
2334 Male, age 80, both hemispheres 242.0
2338 Male, age 61, both hemispheres 207.0
Periaquaductal grey, anterior
nTPM: 237.6
1947 Male, age 18, unknown 244.5
1795 Male, age 51, unknown 234.1
2502 Female, age 75, unknown 234.1
Periaquaductal grey, dorsal
nTPM: 210.2
1840 Male, age 53, unknown 224.4
2464 Female, age 72, unknown 210.5
1831 Male, age 72, unknown 210.4
2850 Male, age 76, both hemispheres 195.7
Periaquaductal grey, lateral
nTPM: 201.5
2272 Male, age 74, both hemispheres 207.2
2053 Male, age 18, unknown 202.5
2140 Male, age 76, both hemispheres 194.7
Pretectal area
nTPM: 235.3
1816 Male, age 51, unknown 272.6
2007 Male, age 72, unknown 266.5
1817 Female, age 42, unknown 263.5
1944 Female, age 72, unknown 260.1
2667 Female, age 75, unknown 251.5
1815 Male, age 53, unknown 234.1
2224 Female, age 72, unknown 222.1
2273 Male, age 74, both hemispheres 213.9
2825 Male, age 18, unknown 209.1
2316 Male, age 76, right hemisphere 202.2
2407 Male, age 75, both hemispheres 193.2
Red nucleus
nTPM: 217.9
1821 Female, age 72, unknown 248.8
2725 Female, age 75, unknown 227.6
1954 Female, age 42, unknown 227.5
2785 Male, age 18, unknown 223.4
2588 Male, age 74, left hemisphere 218.5
2503 Female, age 72, unknown 217.8
2769 Male, age 72, unknown 215.0
2227 Male, age 72, unknown 214.9
1904 Male, age 53, unknown 210.9
2823 Male, age 76, right hemisphere 208.3
1865 Male, age 51, unknown 205.7
2584 Male, age 75, left hemisphere 196.3
Substantia nigra
nTPM: 242.7
1916 Female, age 42, unknown 301.0
1851 Male, age 51, unknown 262.1
1889 Female, age 72, unknown 260.4
2241 Male, age 72, unknown 254.0
1941 Male, age 53, unknown 251.8
2665 Male, age 74, both hemispheres 231.5
2409 Female, age 72, unknown 221.9
2699 Male, age 18, unknown 218.9
2590 Female, age 75, unknown 214.0
2583 Male, age 75, right hemisphere 211.0
Superior colliculus
nTPM: 218.2
2087 Female, age 72, unknown 256.1
2261 Male, age 18, unknown 239.3
1796 Male, age 53, unknown 236.5
2668 Female, age 75, unknown 217.8
1895 Male, age 76, right hemisphere 214.9
1839 Male, age 51, unknown 209.9
2587 Male, age 74, left hemisphere 209.8
2664 Male, age 75, both hemispheres 207.4
1913 Female, age 42, unknown 197.8
1995 Male, age 72, unknown 192.6
Ventral tegmental area
nTPM: 238.5
1915 Female, age 42, unknown 264.7
2410 Female, age 72, unknown 257.2
2218 Male, age 76, both hemispheres 247.7
1942 Male, age 51, unknown 235.0
2223 Female, age 72, unknown 215.7
2021 Male, age 53, unknown 210.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 287.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 287.2
Samples: 139

Max nTPM: 536.8
Min nTPM: 120.5
Std nTPM: 89.9
Median nTPM: 272.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 536.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 521.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 520.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 506.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 499.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 489.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 468.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 458.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 442.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 440.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 437.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 301.0
Pig sample Sample description nTPM
Midbrain
nTPM: 257.0
Samples: 4

Max nTPM: 334.4
Min nTPM: 201.3
Sample A Female 204.8
Sample B Female 201.3
Sample C Male 334.4
Sample D Male 287.6
Periaqueductal gray
nTPM: 198.8
Samples: 3

Max nTPM: 239.0
Min nTPM: 169.5
Sample B Female 188.0
Sample C Male 239.0
Sample D Male 169.5
Substantia nigra
nTPM: 225.9
Samples: 4

Max nTPM: 304.1
Min nTPM: 153.5
Sample A Female 304.1
Sample B Female 164.0
Sample C Male 282.0
Sample D Male 153.5
Superior colliculi
nTPM: 301.0
Samples: 4

Max nTPM: 358.3
Min nTPM: 204.9
Sample A Female 349.3
Sample B Female 204.9
Sample C Male 358.3
Sample D Male 291.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 588.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 588.4
Samples: 4

Max nTPM: 594.4
Min nTPM: 573.4
Sample A Male 594.0
Sample B Male 591.9
Sample C Female 573.4
Sample D Female 594.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.0
513469 Antisense, RP_040810_01_F11, Mouse strain C57BL/6J (56 days, male) 22.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.