MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.9 nTPM
HPA:36.9 nTPM
GTEx:43.5 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:35.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2019 Male, age 18, unknown 39.8
1870 Female, age 42, unknown 36.6
1827 Male, age 72, unknown 36.2
1833 Male, age 53, unknown 35.8
2411 Female, age 72, unknown 35.8
2586 Male, age 75, left hemisphere 35.5
2219 Male, age 76, both hemispheres 35.4
2828 Female, age 72, unknown 34.8
1830 Male, age 51, unknown 34.6
2666 Male, age 74, left hemisphere 33.1
Dorsal raphe nucleus
nTPM: 36.8
2298 Female, age 72, unknown 40.2
1828 Male, age 53, unknown 37.0
2047 Male, age 72, unknown 36.5
2750 Male, age 76, both hemispheres 35.6
2016 Female, age 72, unknown 34.8
Inferior colliculus
nTPM: 35.6
2097 Female, age 72, unknown 36.8
1848 Female, age 42, unknown 35.9
1890 Male, age 53, unknown 35.7
2849 Male, age 72, unknown 34.2
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Pedunculopontine tegmental nucleus
nTPM: 35.9
2334 Male, age 80, both hemispheres 37.0
1921 Female, age 85, both hemispheres 36.5
2338 Male, age 61, both hemispheres 34.4
Periaquaductal grey, anterior
nTPM: 35.9
1947 Male, age 18, unknown 36.2
2502 Female, age 75, unknown 36.2
1795 Male, age 51, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 34.2
2850 Male, age 76, both hemispheres 35.2
1840 Male, age 53, unknown 34.7
1831 Male, age 72, unknown 34.1
2464 Female, age 72, unknown 32.8
Periaquaductal grey, lateral
nTPM: 34.7
2272 Male, age 74, both hemispheres 37.6
2053 Male, age 18, unknown 33.5
2140 Male, age 76, both hemispheres 33.1
Pretectal area
nTPM: 36.9
1817 Female, age 42, unknown 39.4
2007 Male, age 72, unknown 38.5
1816 Male, age 51, unknown 38.0
2273 Male, age 74, both hemispheres 37.9
1815 Male, age 53, unknown 37.3
2667 Female, age 75, unknown 36.8
1944 Female, age 72, unknown 36.4
2224 Female, age 72, unknown 36.4
2407 Male, age 75, both hemispheres 35.9
2316 Male, age 76, right hemisphere 34.9
2825 Male, age 18, unknown 33.8
Red nucleus
nTPM: 36.3
1821 Female, age 72, unknown 39.3
2785 Male, age 18, unknown 38.7
2823 Male, age 76, right hemisphere 37.0
2725 Female, age 75, unknown 36.8
1954 Female, age 42, unknown 36.7
1865 Male, age 51, unknown 36.5
2769 Male, age 72, unknown 35.9
1904 Male, age 53, unknown 35.8
2227 Male, age 72, unknown 35.2
2503 Female, age 72, unknown 34.9
2588 Male, age 74, left hemisphere 34.8
2584 Male, age 75, left hemisphere 34.3
Substantia nigra
nTPM: 36.0
1889 Female, age 72, unknown 39.1
2241 Male, age 72, unknown 37.0
1851 Male, age 51, unknown 36.6
1916 Female, age 42, unknown 36.1
1941 Male, age 53, unknown 36.0
2590 Female, age 75, unknown 35.6
2665 Male, age 74, both hemispheres 35.6
2699 Male, age 18, unknown 35.2
2409 Female, age 72, unknown 34.3
2583 Male, age 75, right hemisphere 34.0
Superior colliculus
nTPM: 35.6
1895 Male, age 76, right hemisphere 37.9
2587 Male, age 74, left hemisphere 36.6
1796 Male, age 53, unknown 36.1
2087 Female, age 72, unknown 35.8
1995 Male, age 72, unknown 35.6
1839 Male, age 51, unknown 35.3
2668 Female, age 75, unknown 35.1
1913 Female, age 42, unknown 34.6
2261 Male, age 18, unknown 34.6
2664 Male, age 75, both hemispheres 34.4
Ventral tegmental area
nTPM: 35.2
2410 Female, age 72, unknown 36.5
1915 Female, age 42, unknown 36.2
2218 Male, age 76, both hemispheres 35.2
1942 Male, age 51, unknown 35.0
2223 Female, age 72, unknown 34.7
2021 Male, age 53, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.5
Samples: 139

Max nTPM: 73.3
Min nTPM: 22.9
Std nTPM: 8.8
Median nTPM: 41.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 73.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 68.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 66.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 64.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 62.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 62.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 58.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 57.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.4
Sample A Female 4.7
Sample B Female 3.4
Sample C Male 3.4
Sample D Male 3.5
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 3.0
Min nTPM: 2.8
Sample B Female 2.9
Sample C Male 3.0
Sample D Male 2.8
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.7
Sample A Female 4.5
Sample B Female 2.7
Sample C Male 2.7
Sample D Male 3.3
Superior colliculi
nTPM: 3.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.7
Sample A Female 4.8
Sample B Female 2.7
Sample C Male 3.4
Sample D Male 3.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 32.6
Sample A Male 33.1
Sample B Male 33.6
Sample C Female 32.6
Sample D Female 41.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68269532 Antisense, RP_041129_01_G06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.