MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:211.6 nTPM
HPA:211.6 nTPM
GTEx:120.9 nTPM
FANTOM5:14.6 Scaled Tags Per Million
Pig:56.1 nTPM
Mouse:20.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 211.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 201.5
2586 Male, age 75, left hemisphere 210.3
2019 Male, age 18, unknown 202.9
2828 Female, age 72, unknown 201.5
2411 Female, age 72, unknown 201.4
1827 Male, age 72, unknown 200.9
1830 Male, age 51, unknown 200.7
1833 Male, age 53, unknown 200.4
2666 Male, age 74, left hemisphere 199.4
2219 Male, age 76, both hemispheres 198.8
1870 Female, age 42, unknown 198.7
Dorsal raphe nucleus
nTPM: 202.8
2047 Male, age 72, unknown 205.1
2298 Female, age 72, unknown 205.0
1828 Male, age 53, unknown 202.3
2750 Male, age 76, both hemispheres 201.3
2016 Female, age 72, unknown 200.4
Inferior colliculus
nTPM: 206.0
1848 Female, age 42, unknown 215.0
1890 Male, age 53, unknown 204.0
2097 Female, age 72, unknown 202.7
2849 Male, age 72, unknown 202.2
Median raphe nucleus
nTPM: 201.4
2220 Male, age 76, midline 201.4
Pedunculopontine tegmental nucleus
nTPM: 211.6
2334 Male, age 80, both hemispheres 216.7
2338 Male, age 61, both hemispheres 212.9
1921 Female, age 85, both hemispheres 205.1
Periaquaductal grey, anterior
nTPM: 199.9
2502 Female, age 75, unknown 202.3
1947 Male, age 18, unknown 199.4
1795 Male, age 51, unknown 198.1
Periaquaductal grey, dorsal
nTPM: 200.6
1840 Male, age 53, unknown 202.9
2464 Female, age 72, unknown 202.0
1831 Male, age 72, unknown 199.8
2850 Male, age 76, both hemispheres 197.8
Periaquaductal grey, lateral
nTPM: 198.7
2053 Male, age 18, unknown 202.9
2272 Male, age 74, both hemispheres 197.3
2140 Male, age 76, both hemispheres 195.9
Pretectal area
nTPM: 202.4
1817 Female, age 42, unknown 208.3
1816 Male, age 51, unknown 205.5
2273 Male, age 74, both hemispheres 205.5
2407 Male, age 75, both hemispheres 204.0
2667 Female, age 75, unknown 203.6
1944 Female, age 72, unknown 201.6
2007 Male, age 72, unknown 200.5
2316 Male, age 76, right hemisphere 200.4
2825 Male, age 18, unknown 200.1
1815 Male, age 53, unknown 198.8
2224 Female, age 72, unknown 198.4
Red nucleus
nTPM: 204.7
1821 Female, age 72, unknown 211.9
1954 Female, age 42, unknown 210.5
2227 Male, age 72, unknown 206.7
2769 Male, age 72, unknown 206.5
2503 Female, age 72, unknown 205.2
2588 Male, age 74, left hemisphere 205.2
1865 Male, age 51, unknown 204.3
1904 Male, age 53, unknown 203.4
2823 Male, age 76, right hemisphere 201.2
2785 Male, age 18, unknown 200.9
2725 Female, age 75, unknown 200.7
2584 Male, age 75, left hemisphere 199.5
Substantia nigra
nTPM: 209.6
1941 Male, age 53, unknown 220.9
2665 Male, age 74, both hemispheres 213.4
1916 Female, age 42, unknown 211.1
2241 Male, age 72, unknown 211.0
2699 Male, age 18, unknown 211.0
1889 Female, age 72, unknown 206.9
1851 Male, age 51, unknown 206.3
2583 Male, age 75, right hemisphere 206.0
2409 Female, age 72, unknown 205.1
2590 Female, age 75, unknown 204.0
Superior colliculus
nTPM: 204.1
2668 Female, age 75, unknown 208.2
2664 Male, age 75, both hemispheres 206.6
1839 Male, age 51, unknown 206.0
1796 Male, age 53, unknown 205.4
2587 Male, age 74, left hemisphere 204.9
2087 Female, age 72, unknown 203.9
1995 Male, age 72, unknown 202.1
2261 Male, age 18, unknown 201.6
1895 Male, age 76, right hemisphere 201.5
1913 Female, age 42, unknown 200.5
Ventral tegmental area
nTPM: 210.8
2223 Female, age 72, unknown 241.0
1942 Male, age 51, unknown 208.1
1915 Female, age 42, unknown 205.5
2410 Female, age 72, unknown 205.5
2021 Male, age 53, unknown 204.2
2218 Male, age 76, both hemispheres 200.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 120.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.9
Samples: 139

Max nTPM: 583.3
Min nTPM: 18.8
Std nTPM: 78.5
Median nTPM: 103.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 583.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 477.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 377.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 347.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 230.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 221.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 213.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 211.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 211.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 209.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 205.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.6
FF:10158-103A5 76 years, female 14.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.1
Pig sample Sample description nTPM
Midbrain
nTPM: 56.1
Samples: 4

Max nTPM: 76.5
Min nTPM: 32.0
Sample A Female 76.5
Sample B Female 75.3
Sample C Male 32.0
Sample D Male 40.7
Periaqueductal gray
nTPM: 45.0
Samples: 3

Max nTPM: 54.9
Min nTPM: 37.2
Sample B Female 54.9
Sample C Male 37.2
Sample D Male 42.8
Substantia nigra
nTPM: 53.2
Samples: 4

Max nTPM: 70.1
Min nTPM: 39.4
Sample A Female 70.1
Sample B Female 57.2
Sample C Male 39.4
Sample D Male 45.9
Superior colliculi
nTPM: 52.4
Samples: 4

Max nTPM: 65.6
Min nTPM: 39.7
Sample A Female 52.9
Sample B Female 65.6
Sample C Male 39.7
Sample D Male 51.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 26.3
Min nTPM: 16.0
Sample A Male 26.3
Sample B Male 20.2
Sample C Female 16.0
Sample D Female 19.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
79670592 Antisense, RP_071204_01_E01, Mouse strain C57BL/6J (56 days, male) 0.2
79556716 Antisense, RP_071204_01_E01, Mouse strain C57BL/6J (56 days, male) 0.2
2298 Antisense, RP_040604_01_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.