MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:151.8 nTPM
HPA:151.8 nTPM
GTEx:192.8 nTPM
FANTOM5:144.4 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:231.2 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 151.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.4
2219 Male, age 76, both hemispheres 135.2
2411 Female, age 72, unknown 135.2
1870 Female, age 42, unknown 135.0
1833 Male, age 53, unknown 134.8
1827 Male, age 72, unknown 134.4
1830 Male, age 51, unknown 134.3
2019 Male, age 18, unknown 131.8
2828 Female, age 72, unknown 128.0
2666 Male, age 74, left hemisphere 125.5
2586 Male, age 75, left hemisphere 119.4
Dorsal raphe nucleus
nTPM: 136.6
2750 Male, age 76, both hemispheres 140.3
1828 Male, age 53, unknown 137.1
2298 Female, age 72, unknown 136.9
2047 Male, age 72, unknown 134.9
2016 Female, age 72, unknown 133.6
Inferior colliculus
nTPM: 130.8
2849 Male, age 72, unknown 135.6
2097 Female, age 72, unknown 130.9
1848 Female, age 42, unknown 129.1
1890 Male, age 53, unknown 127.6
Median raphe nucleus
nTPM: 151.8
2220 Male, age 76, midline 151.8
Pedunculopontine tegmental nucleus
nTPM: 146.8
2334 Male, age 80, both hemispheres 152.1
2338 Male, age 61, both hemispheres 149.6
1921 Female, age 85, both hemispheres 138.8
Periaquaductal grey, anterior
nTPM: 129.8
1947 Male, age 18, unknown 131.8
1795 Male, age 51, unknown 129.7
2502 Female, age 75, unknown 127.7
Periaquaductal grey, dorsal
nTPM: 132.5
2850 Male, age 76, both hemispheres 147.3
1840 Male, age 53, unknown 129.9
2464 Female, age 72, unknown 126.7
1831 Male, age 72, unknown 126.0
Periaquaductal grey, lateral
nTPM: 133.5
2140 Male, age 76, both hemispheres 135.8
2053 Male, age 18, unknown 132.5
2272 Male, age 74, both hemispheres 132.3
Pretectal area
nTPM: 134.8
2667 Female, age 75, unknown 141.9
2224 Female, age 72, unknown 139.7
1817 Female, age 42, unknown 138.8
2825 Male, age 18, unknown 136.2
1816 Male, age 51, unknown 135.7
1815 Male, age 53, unknown 134.8
1944 Female, age 72, unknown 134.8
2007 Male, age 72, unknown 134.0
2273 Male, age 74, both hemispheres 131.4
2316 Male, age 76, right hemisphere 128.4
2407 Male, age 75, both hemispheres 127.2
Red nucleus
nTPM: 134.1
1821 Female, age 72, unknown 143.7
2725 Female, age 75, unknown 140.5
2823 Male, age 76, right hemisphere 139.3
2503 Female, age 72, unknown 137.9
1954 Female, age 42, unknown 137.5
1904 Male, age 53, unknown 134.0
2227 Male, age 72, unknown 133.6
1865 Male, age 51, unknown 132.9
2769 Male, age 72, unknown 128.9
2588 Male, age 74, left hemisphere 128.1
2785 Male, age 18, unknown 128.0
2584 Male, age 75, left hemisphere 125.4
Substantia nigra
nTPM: 138.9
1916 Female, age 42, unknown 147.1
2409 Female, age 72, unknown 147.0
2241 Male, age 72, unknown 146.8
2699 Male, age 18, unknown 141.1
1941 Male, age 53, unknown 139.8
2665 Male, age 74, both hemispheres 138.2
1851 Male, age 51, unknown 137.3
1889 Female, age 72, unknown 137.1
2590 Female, age 75, unknown 131.1
2583 Male, age 75, right hemisphere 123.8
Superior colliculus
nTPM: 129.6
1895 Male, age 76, right hemisphere 133.8
2587 Male, age 74, left hemisphere 133.4
1913 Female, age 42, unknown 132.7
2087 Female, age 72, unknown 131.5
1839 Male, age 51, unknown 131.1
1796 Male, age 53, unknown 129.6
2261 Male, age 18, unknown 129.4
1995 Male, age 72, unknown 127.8
2668 Female, age 75, unknown 126.4
2664 Male, age 75, both hemispheres 120.0
Ventral tegmental area
nTPM: 137.3
2218 Male, age 76, both hemispheres 144.5
1915 Female, age 42, unknown 139.0
2223 Female, age 72, unknown 138.6
2021 Male, age 53, unknown 135.5
2410 Female, age 72, unknown 134.0
1942 Male, age 51, unknown 132.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 192.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 192.8
Samples: 139

Max nTPM: 323.1
Min nTPM: 105.5
Std nTPM: 38.8
Median nTPM: 192.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 323.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 290.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 285.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 284.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 277.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 267.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 264.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 262.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 257.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 256.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 253.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.4
FF:10158-103A5 76 years, female 144.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.1
Pig sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.5
Sample A Female 28.4
Sample B Female 26.3
Sample C Male 26.3
Sample D Male 22.5
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 32.5
Min nTPM: 21.7
Sample B Female 22.4
Sample C Male 32.5
Sample D Male 21.7
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 37.8
Min nTPM: 19.4
Sample A Female 37.8
Sample B Female 21.8
Sample C Male 27.3
Sample D Male 19.4
Superior colliculi
nTPM: 29.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 20.7
Sample A Female 29.4
Sample B Female 24.6
Sample C Male 41.9
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 231.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 231.2
Samples: 4

Max nTPM: 244.2
Min nTPM: 224.2
Sample A Male 229.6
Sample B Male 244.2
Sample C Female 226.9
Sample D Female 224.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68861975 Antisense, RP_050301_01_C05, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.