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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
1503.5
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
12406.2
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
6442.9
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
6183.1
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
5431.3
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
5225.4
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
5141.7
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
4923.6
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
4785.1
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
4541.0
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
4510.3
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
4405.7
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
4403.0
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
4233.2
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
4188.0
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
4159.0
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
4119.5
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
4005.2
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
3904.7
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
3890.1
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
3805.4
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
3800.6
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
3793.6
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
3745.8
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
3708.6
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
3679.8
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
3620.9
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
3546.8
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
3515.6
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
3448.9
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
3432.6
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
3357.5
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
3278.7
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
3257.8
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
3206.8
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
3172.8
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
3105.8
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
3088.4
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
3075.2
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
3070.2
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
3068.8
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
2962.8
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
2946.2
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
2922.5
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
2901.9
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
2896.5
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
2865.4
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
2825.1
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
2805.6
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
2800.3
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
2773.2
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
2751.9
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
2738.8
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
2703.3
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
2673.2
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
2654.4
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
2555.1
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
2542.7
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
2542.2
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
2506.8
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
2488.0
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
2457.4
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
2435.6
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
2428.4
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
2408.9
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
2377.7
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
2377.7
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
2333.9
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
2307.2
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
2293.2
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
2284.1
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
2222.6
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
2218.9
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
2199.4
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
2191.9
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
2186.8
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
2184.0
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
2130.7
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
2125.8
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
2107.5
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
2064.3
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
2062.1
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
2055.0
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
2054.3
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
2045.5
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
2039.1
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
2037.4
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
2032.3
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
2018.7
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
2011.4
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
2010.9
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
1999.5
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
1991.1
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
1988.4
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
1986.8
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
1960.3
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
1959.3
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
1958.8
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
1952.4
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
1950.1
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
1939.8
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
1933.1
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
1918.0
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
1911.0
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
1904.2
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
1885.6
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
1883.8
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
1857.7
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
1844.9
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
1810.9
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
1810.4
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
1804.2
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
1799.9
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
1799.0
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
1777.4
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
1773.1
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
1771.6
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
1762.2
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
1756.7
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
1740.6
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
1726.6
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
1702.5
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
1697.2
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
1691.8
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
1691.0
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
1649.0
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
1644.7
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
1632.6
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
1628.7
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
1621.5
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
1618.8
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
1585.9
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
1579.0
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
1578.5
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
1566.7
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
1558.9
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
1550.7
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
1530.9
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
1527.3
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
1506.9
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
1505.5
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
1496.8
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
1475.3
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
1468.8
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
1464.8
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
1448.6
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
1442.7
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
1442.0
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
1435.1
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
1432.3
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
1415.5
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
1410.0
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
1407.1
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
1397.5
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
1395.7
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
1380.7
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
1377.5
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
1370.7
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
1331.0
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
1328.4
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
1321.4
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
1318.1
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
1317.5
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
1313.3
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
1312.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
1288.5
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
1275.6
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
1268.9
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
1267.3
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
1263.0
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
1262.1
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
1261.3
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
1257.8
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
1251.1
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
1249.5
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
1247.4
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
1245.5
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
1229.3
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
1227.0
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
1223.4
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
1219.8
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
1216.4
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
1213.5
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
1196.3
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
1194.2
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
1192.7
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
1190.9
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
1187.4
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
1181.0
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
1156.7
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
1156.0
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
1146.6
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
1144.7
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
1128.4
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
1121.4
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
1109.2
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
1104.2
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
1101.0
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
1099.0
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
1098.2
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
1085.3
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
1084.8
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
1084.4
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
1084.1
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
1082.9
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
1080.4
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
1080.2
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
1077.2
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
1066.9
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
1057.2
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
1038.3
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
1023.9
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
1019.7
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
1008.6
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
1005.3
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
1003.8
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
1002.5
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
989.5
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
971.6
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
968.4
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
962.1
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
960.3
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
947.0
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
941.5
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
936.3
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
930.5
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
927.7
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
920.0
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
912.5
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
904.3
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
896.6
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
892.8
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
889.0
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
887.3
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
878.1
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
864.5
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
857.2
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
850.3
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
843.3
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
840.1
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
839.7
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
838.8
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
833.8
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
816.4
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
810.8
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
808.4
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
791.1
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
786.9
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
786.0
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
783.4
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
779.8
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
772.0
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
771.2
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
756.3
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
753.8
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
748.7
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
746.9
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
742.2
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
741.4
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
738.5
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
731.4
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
725.6
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
708.1
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
697.3
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
694.1
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
685.7
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
684.4
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
679.9
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
678.1
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
675.8
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
674.8
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
653.2
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
651.5
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
650.4
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
644.3
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
639.6
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
629.6
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
629.5
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
625.0
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
603.0
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
602.6
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
595.8
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
594.0
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
591.5
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
590.8
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
586.4
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
575.1
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
566.5
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
553.5
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
551.3
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
541.7
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
531.8
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
526.8
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
513.2
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
509.6
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
498.8
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
494.4
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
486.4
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
475.6
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
474.1
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
470.0
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
469.6
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
469.0
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
468.0
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
464.2
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
460.0
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
450.8
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
439.7
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
435.0
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
428.8
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
425.5
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
425.0
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
421.7
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
417.3
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
414.6
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
389.2
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
388.5
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
372.6
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
368.1
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
363.3
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
360.3
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
345.8
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
338.1
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
327.3
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
326.0
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
312.6
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
312.2
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
311.4
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
309.9
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
296.3
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
294.2
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
285.5
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
281.2
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
271.0
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
270.8
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
267.9
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
257.9
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
256.9
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
235.9
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
229.3
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
223.5
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
222.1
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
218.1
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
212.7
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
205.4
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
199.5
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
191.3
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
183.4
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
178.2
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
176.2
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
173.8
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
161.7
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
86.4
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
72.6
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
49.8
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
42.5
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
29.4
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
18.4
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
17.2
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
7.6
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
5.4
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
4.6
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
3.2
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
3.1
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
1.2
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
