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LGALS4
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  • LGALS4
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: High
Goblet cells: High
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:691.9 nTPM
HPA:691.9 nTPM
GTEx:591.0 nTPM
FANTOM5:3474.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA031184Antibody HPA031185Antibody HPA031186Antibody CAB025653
Endocrine cells High---
Enterocytes High---
Enterocytes - Microvilli High---
Glandular cells -MediumMediumHigh
Goblet cells High---
Paneth cells Not detected---









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 691.9
overview
Male, age 65
Small intestine sample 232
nTPM: 640.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 859.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 723.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 543.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 591.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 591.0
Samples: 187

Max nTPM: 2112.7
Min nTPM: 1.1
Std nTPM: 567.4
Median nTPM: 445.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2112.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2038.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1985.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1969.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1944.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1850.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1816.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1806.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1767.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1687.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1659.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1655.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1631.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1628.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1458.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1446.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1434.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1421.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1419.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1411.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1410.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1410.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1400.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1400.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1380.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1353.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1327.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1276.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1263.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1221.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1201.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1194.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 1160.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1153.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1146.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1140.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1135.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1133.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1129.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1120.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1101.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1099.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1089.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1081.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1066.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1064.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1017.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1008.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1003.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 954.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 953.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 938.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 925.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 915.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 906.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 898.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 896.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 865.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 848.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 827.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 810.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 795.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 784.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 779.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 728.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 721.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 718.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 711.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 707.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 700.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 694.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 692.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 678.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 659.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 592.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 580.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 568.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 567.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 561.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 553.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 548.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 544.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 538.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 529.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 522.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 522.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 521.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 518.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 517.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 505.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 496.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 453.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 452.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 445.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 431.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 401.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 394.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 391.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 391.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 378.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 367.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 366.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 353.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 348.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 343.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 297.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 286.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 283.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 265.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 261.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 249.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 238.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 232.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 222.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 204.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 194.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 187.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 176.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 174.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 169.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 168.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 159.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 157.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 156.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 145.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 137.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 133.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 132.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 127.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 125.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 112.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 96.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 93.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 91.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 88.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 85.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 83.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 82.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 81.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 78.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 71.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 70.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 67.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 66.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 61.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 61.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 60.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 58.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 57.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 53.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 46.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 43.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 43.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 39.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 38.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 34.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 33.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 31.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 25.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 24.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 24.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 23.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 23.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 20.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 17.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 17.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 16.7
GTEX-1192X-2526-SM-59868 50-59 years, male 13.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 13.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 11.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 10.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 10.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 9.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 8.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 8.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 7.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 7.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 6.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 6.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 5.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 5.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 4.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3474.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3474.3
FF:10024-101D6 15,40,85 years, mixed 3474.3

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