MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:770.8 nTPM
HPA:770.8 nTPM
GTEx:662.0 nTPM
FANTOM5:17.5 Scaled Tags Per Million
Mouse:471.2 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 770.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 761.8
2411 Female, age 72, unknown 780.5
2828 Female, age 72, unknown 768.1
2586 Male, age 75, left hemisphere 764.0
1827 Male, age 72, unknown 763.1
1870 Female, age 42, unknown 761.5
2666 Male, age 74, left hemisphere 758.3
2019 Male, age 18, unknown 757.9
1830 Male, age 51, unknown 757.4
1833 Male, age 53, unknown 756.8
2219 Male, age 76, both hemispheres 750.8
Dorsal raphe nucleus
nTPM: 760.5
2016 Female, age 72, unknown 766.9
2298 Female, age 72, unknown 765.3
2750 Male, age 76, both hemispheres 763.2
1828 Male, age 53, unknown 756.4
2047 Male, age 72, unknown 750.5
Inferior colliculus
nTPM: 764.1
2097 Female, age 72, unknown 770.1
1890 Male, age 53, unknown 763.8
1848 Female, age 42, unknown 762.1
2849 Male, age 72, unknown 760.5
Median raphe nucleus
nTPM: 750.6
2220 Male, age 76, midline 750.6
Pedunculopontine tegmental nucleus
nTPM: 761.0
2334 Male, age 80, both hemispheres 771.2
2338 Male, age 61, both hemispheres 768.2
1921 Female, age 85, both hemispheres 743.6
Periaquaductal grey, anterior
nTPM: 760.4
2502 Female, age 75, unknown 770.8
1795 Male, age 51, unknown 757.6
1947 Male, age 18, unknown 752.8
Periaquaductal grey, dorsal
nTPM: 759.4
1840 Male, age 53, unknown 768.4
2464 Female, age 72, unknown 763.2
1831 Male, age 72, unknown 756.3
2850 Male, age 76, both hemispheres 749.6
Periaquaductal grey, lateral
nTPM: 753.3
2053 Male, age 18, unknown 767.4
2272 Male, age 74, both hemispheres 747.6
2140 Male, age 76, both hemispheres 744.9
Pretectal area
nTPM: 756.6
1817 Female, age 42, unknown 765.7
2007 Male, age 72, unknown 765.0
2316 Male, age 76, right hemisphere 763.0
1815 Male, age 53, unknown 760.7
1816 Male, age 51, unknown 758.3
2825 Male, age 18, unknown 755.6
2224 Female, age 72, unknown 754.2
2273 Male, age 74, both hemispheres 753.1
2407 Male, age 75, both hemispheres 750.0
1944 Female, age 72, unknown 748.5
2667 Female, age 75, unknown 748.3
Red nucleus
nTPM: 767.3
2503 Female, age 72, unknown 781.3
1865 Male, age 51, unknown 774.0
1821 Female, age 72, unknown 773.4
2769 Male, age 72, unknown 772.9
2227 Male, age 72, unknown 770.2
2584 Male, age 75, left hemisphere 767.5
2588 Male, age 74, left hemisphere 765.4
1904 Male, age 53, unknown 764.7
2725 Female, age 75, unknown 762.3
2785 Male, age 18, unknown 761.5
1954 Female, age 42, unknown 759.1
2823 Male, age 76, right hemisphere 755.3
Substantia nigra
nTPM: 770.8
1851 Male, age 51, unknown 788.2
2665 Male, age 74, both hemispheres 784.5
2409 Female, age 72, unknown 782.7
2699 Male, age 18, unknown 777.0
1916 Female, age 42, unknown 770.8
2590 Female, age 75, unknown 769.3
2241 Male, age 72, unknown 766.2
1889 Female, age 72, unknown 760.9
1941 Male, age 53, unknown 756.8
2583 Male, age 75, right hemisphere 751.6
Superior colliculus
nTPM: 762.8
2587 Male, age 74, left hemisphere 782.5
1796 Male, age 53, unknown 774.0
2668 Female, age 75, unknown 766.5
1995 Male, age 72, unknown 764.5
1913 Female, age 42, unknown 760.4
1839 Male, age 51, unknown 759.3
2261 Male, age 18, unknown 759.1
2664 Male, age 75, both hemispheres 755.6
2087 Female, age 72, unknown 755.3
1895 Male, age 76, right hemisphere 750.7
Ventral tegmental area
nTPM: 767.1
1915 Female, age 42, unknown 782.8
2223 Female, age 72, unknown 775.4
2410 Female, age 72, unknown 774.3
2021 Male, age 53, unknown 766.4
1942 Male, age 51, unknown 752.9
2218 Male, age 76, both hemispheres 751.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 662.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 662.0
Samples: 139

Max nTPM: 1628.3
Min nTPM: 347.8
Std nTPM: 216.9
Median nTPM: 615.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1628.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1383.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1365.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1301.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1106.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1083.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1070.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1061.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1026.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1025.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1009.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.5
FF:10158-103A5 76 years, female 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 471.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 471.2
Samples: 4

Max nTPM: 506.2
Min nTPM: 420.6
Sample A Male 506.2
Sample B Male 461.2
Sample C Female 420.6
Sample D Female 496.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
68076526 Antisense, RP_040923_02_D09, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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