HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA:7.5 nTPM
GTEx:7.0 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:28.9 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038789
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.5
Sample id Sample description nTPM
Hippocampus
nTPM: 6.3
1898 Male, age 80, left hemisphere 9.5
2621 Female, age 67, right hemisphere 8.5
1855 Male, age 76, left hemisphere 7.6
1911 Female, age 85, right hemisphere 6.3
2529 Female, age 94, left hemisphere 3.2
2148 Female, age 91, left hemisphere 2.6
Dentate gyrus
nTPM: 5.6
2530 Female, age 94, left hemisphere 16.2
2010 Male, age 76, both hemispheres 7.5
1927 Female, age 91, both hemispheres 4.8
2246 Female, age 85, both hemispheres 2.5
2528 Male, age 74, both hemispheres 1.8
2531 Female, age 67, both hemispheres 0.8
Entorhinal gyrus
nTPM: 0.1
2117 Female, age 91, right hemisphere 0.7
2686 Male, age 75, right hemisphere 0.4
1787 Male, age 76, left hemisphere 0.0
1938 Female, age 85, left hemisphere 0.0
2613 Female, age 94, left hemisphere 0.0
2764 Male, age 80, right hemisphere 0.0
Hippocampus, CA1
nTPM: 7.5
2749 Male, age 80, left hemisphere 18.9
2527 Male, age 74, both hemispheres 8.2
1873 Female, age 85, both hemispheres 6.5
2082 Female, age 91, right hemisphere 3.3
2045 Male, age 76, both hemispheres 0.4
Hippocampus, CA2
nTPM: 6.1
1963 Male, age 80, left hemisphere 13.0
2249 Male, age 74, both hemispheres 10.6
2437 Female, age 94, left hemisphere 5.6
2113 Female, age 91, right hemisphere 4.4
1892 Male, age 76, both hemispheres 2.1
1940 Female, age 85, left hemisphere 1.0
Hippocampus, CA3
nTPM: 6.0
2137 Male, age 80, left hemisphere 18.0
2436 Male, age 74, both hemispheres 6.2
2861 Female, age 67, both hemispheres 6.0
1867 Male, age 76, both hemispheres 4.1
1891 Female, age 85, both hemispheres 0.9
2620 Female, age 94, left hemisphere 0.6
Parahippocampal cortex
nTPM: 1.0
2245 Female, age 91, both hemispheres 4.5
2250 Female, age 67, right hemisphere 3.3
2018 Male, age 76, both hemispheres 1.2
2622 Female, age 67, right hemisphere 0.4
2693 Female, age 94, both hemispheres 0.2
2532 Female, age 72, left hemisphere 0.1
2692 Male, age 74, both hemispheres 0.1
1850 Male, age 80, both hemispheres 0.0
1933 Female, age 85, both hemispheres 0.0
1990 Female, age 91, right hemisphere 0.0
Perirhinal gyrus
nTPM: 0.2
1847 Female, age 91, left hemisphere 0.4
1794 Male, age 80, right hemisphere 0.3
2521 Female, age 94, right hemisphere 0.3
1841 Female, age 85, right hemisphere 0.2
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 2.2
1901 Male, age 80, both hemispheres 6.2
2042 Male, age 76, both hemispheres 5.4
2729 Female, age 91, right hemisphere 1.1
2619 Male, age 74, both hemispheres 0.3
2438 Female, age 94, left hemisphere 0.1
1977 Female, age 85, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.0
Samples: 197

Max nTPM: 44.3
Min nTPM: 0.0
Std nTPM: 7.7
Median nTPM: 4.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 44.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 30.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 30.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 29.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 28.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 26.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 26.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 24.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 24.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 24.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 24.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 10.4
FF:10169-103B7 60 years, female 19.8
FF:10153-102I9 76 years, female 1.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.4
Sample D Male 0.1
Entorhinal cortex
nTPM: 4.2
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.5
Sample A Female 4.9
Sample B Female 3.6
Sample C Male 4.9
Sample D Male 3.5
Subiculum
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.3
Ventral hippocampus
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.4
Samples: 4

Max nTPM: 12.2
Min nTPM: 10.5
Sample A Male 10.5
Sample B Male 10.7
Sample C Female 12.1
Sample D Female 12.2
Hippocampal formation
nTPM: 28.9
Samples: 4

Max nTPM: 34.9
Min nTPM: 20.3
Sample A Male 20.3
Sample B Male 31.3
Sample C Female 34.9
Sample D Female 29.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
69236807 Antisense, RP_050331_01_B11, Mouse strain C57BL/6J (56 days, male) 5.3
72119628 Antisense, RP_051017_04_B01, Mouse strain C57BL/6J (56 days, male) 3.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.