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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:251.3 nTPM
HPA:251.3 nTPM
GTEx:167.5 nTPM
FANTOM5:160.7 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:128.3 nTPM
Allen mouse:7.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 251.3
Sample id Sample description nTPM
Amygdala
nTPM: 251.3
2814 Male, age 76, right hemisphere 276.5
2514 Male, age 75, right hemisphere 267.4
2517 Female, age 94, left hemisphere 245.1
2695 Female, age 67, right hemisphere 243.5
1987 Female, age 91, left hemisphere 224.1
Basal amygdala
nTPM: 231.2
2609 Male, age 75, right hemisphere 246.2
2685 Female, age 94, left hemisphere 236.3
2110 Male, age 80, left hemisphere 233.8
1955 Male, age 76, both hemispheres 231.9
2827 Female, age 67, right hemisphere 230.7
2243 Female, age 91, right hemisphere 208.3
Central amygdala
nTPM: 237.5
2826 Female, age 94, left hemisphere 245.1
1905 Male, age 76, both hemispheres 244.5
2515 Male, age 75, right hemisphere 233.6
2701 Female, age 91, right hemisphere 233.1
2239 Male, age 80, left hemisphere 231.2
Corticomedial amygdala
nTPM: 218.9
2428 Male, age 75, right hemisphere 250.1
2429 Female, age 94, left hemisphere 230.3
2240 Male, age 76, both hemispheres 214.9
2535 Female, age 67, right hemisphere 214.4
2829 Male, age 80, left hemisphere 209.7
2242 Female, age 91, right hemisphere 194.2
Lateral amygdala
nTPM: 244.7
2516 Male, age 75, right hemisphere 261.3
2830 Female, age 67, right hemisphere 247.7
1883 Male, age 76, both hemispheres 243.7
2256 Male, age 80, left hemisphere 243.7
2534 Female, age 94, left hemisphere 241.1
2255 Female, age 91, right hemisphere 230.5
Stria terminalis, bed nucleus
nTPM: 212.0
1974 Female, age 91, both hemispheres 225.5
2486 Female, age 94, both hemispheres 205.6
2201 Male, age 74, unknown 204.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 167.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 167.5
Samples: 152

Max nTPM: 548.8
Min nTPM: 13.4
Std nTPM: 79.4
Median nTPM: 154.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 548.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 453.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 379.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 374.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 352.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 333.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 310.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 310.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 297.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 292.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 291.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 288.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 273.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 267.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 266.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 262.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 261.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 261.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 253.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 251.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 247.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 244.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 243.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 238.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 237.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 233.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 233.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 228.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 225.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 224.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 224.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 223.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 220.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 216.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 212.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 210.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 209.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 206.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 204.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 202.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 196.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 193.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 192.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 192.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 192.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 191.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 190.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 189.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 187.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 185.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 184.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 184.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 182.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 181.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 180.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 179.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 179.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 179.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 177.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 176.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 176.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 173.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 172.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 171.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 170.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 169.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 169.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 168.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 167.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 167.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 164.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 162.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 162.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 161.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 160.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 155.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 152.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 152.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 151.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 150.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 150.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 150.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 149.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 149.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 148.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 144.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 141.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 140.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 140.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 139.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 138.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 137.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 136.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 136.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 135.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 135.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 133.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 133.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 131.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 129.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 128.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 128.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 123.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 121.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 119.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 118.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 117.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 116.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 116.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 113.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 111.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 109.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 108.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 106.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 105.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 104.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 102.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 100.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 99.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 96.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 95.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 94.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 93.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 93.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 92.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 91.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 91.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 87.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 85.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 84.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 81.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 81.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 81.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 79.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 78.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 77.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 77.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 76.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 74.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 69.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 65.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 61.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 35.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 160.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 160.7
FF:10151-102I7 76 years, female 160.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.3
Pig sample Sample description nTPM
Amygdala
nTPM: 17.3
Samples: 4

Max nTPM: 30.9
Min nTPM: 10.1
Sample A Female 10.2
Sample B Female 30.9
Sample C Male 17.9
Sample D Male 10.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 128.3
Samples: 4

Max nTPM: 216.6
Min nTPM: 90.0
Sample A Male 99.7
Sample B Male 90.0
Sample C Female 216.6
Sample D Female 106.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.7
386243 Antisense, RP_040804_01_D04, Mouse strain C57BL/6J (56 days, male) 7.7

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