MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.7 nTPM
HPA:31.7 nTPM
GTEx:38.3 nTPM
FANTOM5:20.6 Scaled Tags Per Million
Pig:17.6 nTPM
Mouse:9.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2586 Male, age 75, left hemisphere 33.0
2219 Male, age 76, both hemispheres 30.1
2666 Male, age 74, left hemisphere 28.9
1827 Male, age 72, unknown 28.6
2411 Female, age 72, unknown 28.4
2828 Female, age 72, unknown 27.5
1870 Female, age 42, unknown 26.9
1833 Male, age 53, unknown 26.5
2019 Male, age 18, unknown 25.6
1830 Male, age 51, unknown 25.5
Dorsal raphe nucleus
nTPM: 28.8
2298 Female, age 72, unknown 31.5
2047 Male, age 72, unknown 29.8
2750 Male, age 76, both hemispheres 28.5
1828 Male, age 53, unknown 27.3
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 27.5
2097 Female, age 72, unknown 28.4
1848 Female, age 42, unknown 27.6
1890 Male, age 53, unknown 27.2
2849 Male, age 72, unknown 26.7
Median raphe nucleus
nTPM: 29.4
2220 Male, age 76, midline 29.4
Pedunculopontine tegmental nucleus
nTPM: 27.2
2334 Male, age 80, both hemispheres 28.4
1921 Female, age 85, both hemispheres 27.6
2338 Male, age 61, both hemispheres 25.5
Periaquaductal grey, anterior
nTPM: 31.7
1795 Male, age 51, unknown 32.4
1947 Male, age 18, unknown 31.7
2502 Female, age 75, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 26.0
2464 Female, age 72, unknown 27.7
1840 Male, age 53, unknown 27.3
1831 Male, age 72, unknown 24.7
2850 Male, age 76, both hemispheres 24.2
Periaquaductal grey, lateral
nTPM: 26.3
2272 Male, age 74, both hemispheres 27.4
2053 Male, age 18, unknown 26.4
2140 Male, age 76, both hemispheres 25.1
Pretectal area
nTPM: 27.4
2007 Male, age 72, unknown 30.1
2825 Male, age 18, unknown 28.4
1816 Male, age 51, unknown 28.2
2407 Male, age 75, both hemispheres 28.2
1817 Female, age 42, unknown 27.3
1944 Female, age 72, unknown 27.1
2224 Female, age 72, unknown 27.0
2273 Male, age 74, both hemispheres 26.8
1815 Male, age 53, unknown 26.6
2316 Male, age 76, right hemisphere 26.3
2667 Female, age 75, unknown 25.5
Red nucleus
nTPM: 27.0
2584 Male, age 75, left hemisphere 28.7
2785 Male, age 18, unknown 28.4
2588 Male, age 74, left hemisphere 28.1
2227 Male, age 72, unknown 27.9
2769 Male, age 72, unknown 27.8
1954 Female, age 42, unknown 27.4
2503 Female, age 72, unknown 26.9
1904 Male, age 53, unknown 26.8
1821 Female, age 72, unknown 26.3
1865 Male, age 51, unknown 26.2
2823 Male, age 76, right hemisphere 25.0
2725 Female, age 75, unknown 24.8
Substantia nigra
nTPM: 28.6
1916 Female, age 42, unknown 30.9
1851 Male, age 51, unknown 30.7
2590 Female, age 75, unknown 29.6
1941 Male, age 53, unknown 29.5
2409 Female, age 72, unknown 28.9
2583 Male, age 75, right hemisphere 28.1
2665 Male, age 74, both hemispheres 27.9
2699 Male, age 18, unknown 26.9
2241 Male, age 72, unknown 26.7
1889 Female, age 72, unknown 26.6
Superior colliculus
nTPM: 27.7
2668 Female, age 75, unknown 32.1
1796 Male, age 53, unknown 29.8
2664 Male, age 75, both hemispheres 29.3
2261 Male, age 18, unknown 29.2
2087 Female, age 72, unknown 27.4
1839 Male, age 51, unknown 26.9
1895 Male, age 76, right hemisphere 25.8
1995 Male, age 72, unknown 25.8
2587 Male, age 74, left hemisphere 25.5
1913 Female, age 42, unknown 25.3
Ventral tegmental area
nTPM: 28.4
1915 Female, age 42, unknown 30.1
1942 Male, age 51, unknown 29.4
2410 Female, age 72, unknown 28.7
2021 Male, age 53, unknown 27.9
2223 Female, age 72, unknown 27.6
2218 Male, age 76, both hemispheres 26.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.3
Samples: 139

Max nTPM: 70.0
Min nTPM: 18.6
Std nTPM: 10.0
Median nTPM: 37.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 70.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 68.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 60.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 60.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 59.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 58.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 57.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 55.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 54.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 54.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.6
FF:10158-103A5 76 years, female 20.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.6
Pig sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 26.2
Min nTPM: 13.6
Sample A Female 26.2
Sample B Female 16.0
Sample C Male 14.5
Sample D Male 13.6
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 14.4
Min nTPM: 12.4
Sample B Female 14.4
Sample C Male 13.3
Sample D Male 12.4
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 19.8
Min nTPM: 13.3
Sample A Female 15.7
Sample B Female 13.3
Sample C Male 15.3
Sample D Male 19.8
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.8
Sample A Female 15.5
Sample B Female 10.8
Sample C Male 14.5
Sample D Male 15.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.2
Sample A Male 11.1
Sample B Male 8.2
Sample C Female 9.1
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68638023 Antisense, RP_050126_02_A12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.