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GAP43
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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
91.108
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:43.5 nTPM
GTEx:152.0 nTPM
FANTOM5:305.7 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA013392Antibody HPA015600Antibody CAB004417
Glial cells HighHighMedium
Neuronal cells HighMediumHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB078783
Hippocampal formation mean intensity 91.108
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 71.600
Molecular layer of the dentate gyrus 74.388
Granular dentate gyrus 65.181
CA1 - oriens layer 82.562
CA1 - pyramidal layer 65.014
CA1 - radiatum layer 87.563
CA2 - oriens layer 79.224
CA2 - pyramidal layer 61.739
CA2 - radiatum layer 77.462
CA3 - oriens layer 62.269
CA3 - pyramidal layer 61.772
CA3 - radiatum layer 69.601
Stratum lucidum 70.593
Lacunosum moleculare 70.744
Subiculum 77.210

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 43.5
Sample id Sample description nTPM
Hippocampus
nTPM: 43.5
2621 Female, age 67, right hemisphere 71.2
1898 Male, age 80, left hemisphere 65.8
1855 Male, age 76, left hemisphere 39.8
2148 Female, age 91, left hemisphere 35.2
2529 Female, age 94, left hemisphere 31.3
1911 Female, age 85, right hemisphere 17.6

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 152.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 152.0
Samples: 197

Max nTPM: 658.3
Min nTPM: 19.7
Std nTPM: 115.7
Median nTPM: 121.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 658.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 628.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 566.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 551.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 473.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 448.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 441.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 414.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 412.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 397.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 386.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 366.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 354.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 344.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 340.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 336.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 335.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 327.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 324.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 321.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 313.8
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 291.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 286.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 279.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 268.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 268.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 266.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 256.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 255.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 253.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 251.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 247.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 245.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 244.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 228.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 226.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 218.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 218.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 216.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 213.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 213.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 212.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 210.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 203.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 203.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 201.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 201.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 201.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 195.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 191.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 191.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 188.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 188.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 186.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 184.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 182.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 182.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 178.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 176.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 174.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 171.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 171.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 169.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 168.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 166.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 165.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 163.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 161.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 159.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 158.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 157.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 156.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 154.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 153.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 149.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 149.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 146.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 142.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 142.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 141.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 141.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 140.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 139.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 139.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 139.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 136.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 134.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 129.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 129.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 127.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 126.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 126.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 124.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 124.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 123.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 122.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 122.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 121.5
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 121.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 121.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 119.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 118.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 118.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 117.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 116.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 114.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 113.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 111.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 111.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 111.0
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 109.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 108.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 107.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 106.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 106.4
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 105.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 104.4
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 102.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 100.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 99.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 97.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 95.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 93.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 93.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 91.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 91.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 91.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 90.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 90.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 89.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 89.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 88.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 87.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 85.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 83.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 81.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 81.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 79.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 77.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 77.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 76.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 75.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 75.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 74.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 73.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 72.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 71.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 70.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 70.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 68.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 68.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 67.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 66.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 65.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 65.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 64.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 64.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 62.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 62.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 61.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 61.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 58.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 57.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 54.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 54.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 54.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 53.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 52.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 50.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 50.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 49.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 49.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 48.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 47.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 45.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 45.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 44.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 44.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 44.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 41.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 40.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 37.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 37.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 34.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 33.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 31.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 31.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 30.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 29.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 28.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 28.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 27.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 27.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 26.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 26.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 25.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 19.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 305.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 305.7
FF:10169-103B7 60 years, female 311.8
FF:10153-102I9 76 years, female 299.5

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