MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:67.4 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:150.5 nTPM
Mouse:216.1 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
1827 Male, age 72, unknown 48.4
1870 Female, age 42, unknown 35.2
2828 Female, age 72, unknown 33.8
2411 Female, age 72, unknown 33.4
2586 Male, age 75, left hemisphere 29.5
2219 Male, age 76, both hemispheres 22.7
2666 Male, age 74, left hemisphere 20.7
1830 Male, age 51, unknown 18.9
1833 Male, age 53, unknown 17.0
2019 Male, age 18, unknown 7.2
Dorsal raphe nucleus
nTPM: 19.7
2298 Female, age 72, unknown 29.5
2750 Male, age 76, both hemispheres 22.7
2016 Female, age 72, unknown 20.6
2047 Male, age 72, unknown 15.3
1828 Male, age 53, unknown 10.6
Inferior colliculus
nTPM: 21.9
2849 Male, age 72, unknown 28.6
1848 Female, age 42, unknown 23.9
2097 Female, age 72, unknown 19.7
1890 Male, age 53, unknown 15.4
Median raphe nucleus
nTPM: 26.4
2220 Male, age 76, midline 26.4
Pedunculopontine tegmental nucleus
nTPM: 42.2
1921 Female, age 85, both hemispheres 56.0
2338 Male, age 61, both hemispheres 38.4
2334 Male, age 80, both hemispheres 32.3
Periaquaductal grey, anterior
nTPM: 33.7
1795 Male, age 51, unknown 52.9
2502 Female, age 75, unknown 32.8
1947 Male, age 18, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 32.1
2850 Male, age 76, both hemispheres 37.7
1831 Male, age 72, unknown 34.9
1840 Male, age 53, unknown 32.6
2464 Female, age 72, unknown 23.3
Periaquaductal grey, lateral
nTPM: 41.7
2053 Male, age 18, unknown 75.0
2140 Male, age 76, both hemispheres 31.3
2272 Male, age 74, both hemispheres 18.9
Pretectal area
nTPM: 30.0
2224 Female, age 72, unknown 91.3
2825 Male, age 18, unknown 71.4
2316 Male, age 76, right hemisphere 28.5
2667 Female, age 75, unknown 27.8
1816 Male, age 51, unknown 19.1
2407 Male, age 75, both hemispheres 18.6
2007 Male, age 72, unknown 17.0
1815 Male, age 53, unknown 15.5
2273 Male, age 74, both hemispheres 15.5
1944 Female, age 72, unknown 15.1
1817 Female, age 42, unknown 10.5
Red nucleus
nTPM: 9.7
2584 Male, age 75, left hemisphere 25.3
2227 Male, age 72, unknown 11.2
2769 Male, age 72, unknown 10.9
1821 Female, age 72, unknown 10.7
2725 Female, age 75, unknown 9.6
2823 Male, age 76, right hemisphere 8.7
1865 Male, age 51, unknown 7.5
1954 Female, age 42, unknown 7.4
2503 Female, age 72, unknown 6.8
2588 Male, age 74, left hemisphere 6.7
1904 Male, age 53, unknown 6.5
2785 Male, age 18, unknown 5.5
Substantia nigra
nTPM: 13.4
1941 Male, age 53, unknown 35.0
1889 Female, age 72, unknown 23.6
2241 Male, age 72, unknown 18.3
2590 Female, age 75, unknown 11.2
2699 Male, age 18, unknown 8.2
2583 Male, age 75, right hemisphere 8.0
1851 Male, age 51, unknown 7.8
2665 Male, age 74, both hemispheres 7.8
1916 Female, age 42, unknown 7.7
2409 Female, age 72, unknown 5.9
Superior colliculus
nTPM: 21.0
2261 Male, age 18, unknown 47.8
1839 Male, age 51, unknown 27.3
1895 Male, age 76, right hemisphere 27.0
1796 Male, age 53, unknown 26.1
2587 Male, age 74, left hemisphere 21.8
2664 Male, age 75, both hemispheres 21.5
1913 Female, age 42, unknown 13.3
2668 Female, age 75, unknown 11.4
2087 Female, age 72, unknown 9.5
1995 Male, age 72, unknown 4.3
Ventral tegmental area
nTPM: 20.8
1915 Female, age 42, unknown 31.6
2021 Male, age 53, unknown 28.1
1942 Male, age 51, unknown 18.7
2218 Male, age 76, both hemispheres 18.4
2223 Female, age 72, unknown 14.4
2410 Female, age 72, unknown 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.4
Samples: 139

Max nTPM: 968.6
Min nTPM: 1.0
Std nTPM: 117.3
Median nTPM: 34.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 968.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 577.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 498.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 418.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 318.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 284.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 253.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 245.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 227.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 196.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 192.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 150.5
Pig sample Sample description nTPM
Midbrain
nTPM: 150.5
Samples: 4

Max nTPM: 295.9
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 90.6
Sample C Male 295.9
Sample D Male 194.7
Periaqueductal gray
nTPM: 78.0
Samples: 3

Max nTPM: 111.6
Min nTPM: 53.1
Sample B Female 53.1
Sample C Male 111.6
Sample D Male 69.3
Substantia nigra
nTPM: 88.9
Samples: 4

Max nTPM: 166.0
Min nTPM: 10.2
Sample A Female 166.0
Sample B Female 37.8
Sample C Male 141.6
Sample D Male 10.2
Superior colliculi
nTPM: 122.5
Samples: 4

Max nTPM: 196.2
Min nTPM: 71.2
Sample A Female 137.9
Sample B Female 84.5
Sample C Male 196.2
Sample D Male 71.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 216.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 216.1
Samples: 4

Max nTPM: 222.4
Min nTPM: 208.6
Sample A Male 221.2
Sample B Male 208.6
Sample C Female 212.3
Sample D Female 222.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
75496134 Antisense, RP_060523_03_F02, Mouse strain C57BL/6J (56 days, male) 12.2
75496136 Antisense, RP_060523_03_H02, Mouse strain C57BL/6J (56 days, male) 12.0
75492322 Antisense, RP_060523_03_F02, Mouse strain C57BL/6J (56 days, male) 11.8
75496135 Antisense, RP_060523_03_G02, Mouse strain C57BL/6J (56 days, male) 11.5
75496133 Antisense, RP_060523_03_E02, Mouse strain C57BL/6J (56 days, male) 11.5
75457438 Antisense, RP_060523_03_E02, Mouse strain C57BL/6J (56 days, male) 11.5
75492430 Antisense, RP_060523_03_H02, Mouse strain C57BL/6J (56 days, male) 11.2
75457440 Antisense, RP_060523_03_G02, Mouse strain C57BL/6J (56 days, male) 10.8
75492224 Antisense, RP_060523_03_E02, Mouse strain C57BL/6J (56 days, male) 10.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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