MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA:17.3 nTPM
GTEx:24.2 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:28.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.5
2828 Female, age 72, unknown 17.8
1870 Female, age 42, unknown 16.7
1833 Male, age 53, unknown 16.4
2411 Female, age 72, unknown 16.2
2666 Male, age 74, left hemisphere 15.4
1830 Male, age 51, unknown 15.3
1827 Male, age 72, unknown 15.1
2019 Male, age 18, unknown 14.6
2219 Male, age 76, both hemispheres 14.1
2586 Male, age 75, left hemisphere 13.6
Dorsal raphe nucleus
nTPM: 16.7
2016 Female, age 72, unknown 18.7
2298 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 16.4
2750 Male, age 76, both hemispheres 16.2
2047 Male, age 72, unknown 15.4
Inferior colliculus
nTPM: 16.6
1848 Female, age 42, unknown 17.3
1890 Male, age 53, unknown 17.0
2097 Female, age 72, unknown 16.5
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Pedunculopontine tegmental nucleus
nTPM: 16.8
2338 Male, age 61, both hemispheres 19.3
2334 Male, age 80, both hemispheres 16.1
1921 Female, age 85, both hemispheres 15.2
Periaquaductal grey, anterior
nTPM: 15.1
2502 Female, age 75, unknown 15.3
1947 Male, age 18, unknown 15.0
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 17.0
2850 Male, age 76, both hemispheres 18.5
1840 Male, age 53, unknown 17.0
1831 Male, age 72, unknown 16.3
2464 Female, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 16.8
2053 Male, age 18, unknown 17.9
2140 Male, age 76, both hemispheres 17.2
2272 Male, age 74, both hemispheres 15.2
Pretectal area
nTPM: 15.9
2667 Female, age 75, unknown 17.2
1817 Female, age 42, unknown 16.7
2316 Male, age 76, right hemisphere 16.6
1815 Male, age 53, unknown 16.5
1944 Female, age 72, unknown 16.3
2273 Male, age 74, both hemispheres 16.1
2825 Male, age 18, unknown 16.1
2224 Female, age 72, unknown 15.8
1816 Male, age 51, unknown 15.2
2007 Male, age 72, unknown 14.3
2407 Male, age 75, both hemispheres 14.0
Red nucleus
nTPM: 17.3
2503 Female, age 72, unknown 19.1
1865 Male, age 51, unknown 18.8
2769 Male, age 72, unknown 18.6
2823 Male, age 76, right hemisphere 18.4
1954 Female, age 42, unknown 18.3
2227 Male, age 72, unknown 18.3
1904 Male, age 53, unknown 18.0
1821 Female, age 72, unknown 17.9
2725 Female, age 75, unknown 16.4
2588 Male, age 74, left hemisphere 15.3
2785 Male, age 18, unknown 14.8
2584 Male, age 75, left hemisphere 13.5
Substantia nigra
nTPM: 17.1
2699 Male, age 18, unknown 20.3
2409 Female, age 72, unknown 19.6
2590 Female, age 75, unknown 17.3
2241 Male, age 72, unknown 17.2
1916 Female, age 42, unknown 17.0
1889 Female, age 72, unknown 16.9
1851 Male, age 51, unknown 16.8
2665 Male, age 74, both hemispheres 16.2
1941 Male, age 53, unknown 15.4
2583 Male, age 75, right hemisphere 14.4
Superior colliculus
nTPM: 15.7
1995 Male, age 72, unknown 18.2
1913 Female, age 42, unknown 17.4
2087 Female, age 72, unknown 16.7
1839 Male, age 51, unknown 15.8
2587 Male, age 74, left hemisphere 15.6
1895 Male, age 76, right hemisphere 15.3
1796 Male, age 53, unknown 15.1
2261 Male, age 18, unknown 15.0
2668 Female, age 75, unknown 14.5
2664 Male, age 75, both hemispheres 13.5
Ventral tegmental area
nTPM: 16.0
2410 Female, age 72, unknown 16.7
1915 Female, age 42, unknown 16.4
2218 Male, age 76, both hemispheres 15.9
1942 Male, age 51, unknown 15.8
2021 Male, age 53, unknown 15.8
2223 Female, age 72, unknown 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.2
Samples: 139

Max nTPM: 51.8
Min nTPM: 4.8
Std nTPM: 9.1
Median nTPM: 22.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 51.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 51.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 48.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 46.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 44.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 42.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 41.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 39.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 39.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 38.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.2
FF:10158-103A5 76 years, female 36.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.2
Pig sample Sample description nTPM
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 41.3
Min nTPM: 24.1
Sample A Female 41.3
Sample B Female 32.0
Sample C Male 24.1
Sample D Male 24.5
Periaqueductal gray
nTPM: 32.1
Samples: 3

Max nTPM: 32.8
Min nTPM: 31.3
Sample B Female 32.3
Sample C Male 31.3
Sample D Male 32.8
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 36.0
Min nTPM: 24.8
Sample A Female 29.1
Sample B Female 29.6
Sample C Male 24.8
Sample D Male 36.0
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 31.5
Min nTPM: 24.5
Sample A Female 31.5
Sample B Female 26.9
Sample C Male 24.5
Sample D Male 27.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 30.3
Min nTPM: 27.1
Sample A Male 30.3
Sample B Male 27.1
Sample C Female 27.7
Sample D Female 29.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69887445 Antisense, RP_050512_03_F12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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