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RCAN2
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:57.6 nTPM
FANTOM5:145.2 Scaled Tags Per Million
Pig:99.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA053880
Glial cells Not detected
Neuronal cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.6
Samples: 246

Max nTPM: 181.2
Min nTPM: 5.6
Std nTPM: 32.3
Median nTPM: 53.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 181.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 158.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 132.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 130.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 126.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 126.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 125.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 124.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 124.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 122.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 121.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 121.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 117.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 116.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 114.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 114.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 111.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 109.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 107.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 107.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 107.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 105.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 105.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 104.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 103.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 102.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 102.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 102.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 102.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 101.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 100.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 98.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 97.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 96.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 96.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 95.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 94.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 94.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 93.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 91.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 89.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 88.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 87.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 87.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 86.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 86.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 85.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 85.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 84.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 84.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 83.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 82.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 81.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 81.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 81.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 80.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 79.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 79.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 79.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 78.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 78.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 77.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 76.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 76.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 74.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 74.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 74.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 74.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 73.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 73.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 73.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 72.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 72.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 71.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 71.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 71.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 71.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 71.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 70.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 69.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 67.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 67.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 67.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 66.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 66.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 66.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 66.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 66.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 66.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 66.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 65.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 64.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 64.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 63.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 63.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 62.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 62.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 61.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 61.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 60.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 60.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 59.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 59.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 59.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 59.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 58.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 58.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 58.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 58.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 58.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 58.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 57.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 56.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 55.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 54.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 54.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 54.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 53.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 53.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 53.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 53.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 53.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 52.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 52.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 51.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 51.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 50.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 50.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 50.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 49.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 49.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 49.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 49.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 49.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 49.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 48.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 48.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 47.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 47.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 47.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 47.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 46.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 45.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 45.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 45.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 44.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 44.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 44.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 44.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 44.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 43.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 43.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 43.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 43.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 42.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 41.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 40.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 40.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 40.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 40.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 39.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 39.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 39.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 38.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 38.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 37.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 37.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 36.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 35.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 35.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 34.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 34.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 34.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 34.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 33.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 33.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 32.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 32.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 32.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 31.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 31.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 31.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 31.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 30.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 30.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 30.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 30.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 29.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 28.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 28.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 27.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 27.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 27.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 26.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 26.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 26.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 26.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 26.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 24.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 24.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 23.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 23.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 23.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 23.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 23.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 22.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 22.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 22.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 21.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 21.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 20.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 20.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 20.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 20.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 20.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 18.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 18.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 17.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 17.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 17.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 16.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 16.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 16.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 16.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 16.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 16.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 14.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 14.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 14.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 14.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 14.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 13.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 13.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 13.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 11.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 9.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 8.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 8.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 6.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 5.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 145.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 145.2
FF:10164-103B2 76 years, female 145.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.7
Pig sample Sample description nTPM
Caudate
nTPM: 99.7
Samples: 4

Max nTPM: 125.8
Min nTPM: 76.4
Sample A Female 80.4
Sample B Female 76.4
Sample C Male 125.8
Sample D Male 116.1

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