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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:99.4 nTPM
HPA:66.1 nTPM
GTEx:99.4 nTPM
FANTOM5:75.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA044845
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 66.1
overview
Male, age 65
Small intestine sample 232
nTPM: 63.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 72.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 71.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 56.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 99.4
Samples: 187

Max nTPM: 226.3
Min nTPM: 51.2
Std nTPM: 31.6
Median nTPM: 88.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 226.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 220.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 220.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 186.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 175.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 171.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 165.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 164.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 163.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 162.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 160.9
GTEX-1192X-2526-SM-59868 50-59 years, male 159.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 158.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 153.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 153.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 153.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 149.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 147.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 147.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 145.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 142.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 142.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 140.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 139.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 137.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 135.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 132.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 132.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 128.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 126.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 126.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 125.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 123.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 122.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 122.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 122.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 121.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 121.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 120.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 120.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 119.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 117.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 116.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 116.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 115.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 114.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 113.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 112.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 112.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 112.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 112.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 111.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 110.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 109.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 109.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 108.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 106.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 106.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 105.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 103.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 103.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 102.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 102.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 101.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 101.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 100.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 100.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 100.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 98.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 98.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 97.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 96.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 95.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 95.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 95.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 95.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 94.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 94.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 94.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 94.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 93.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 93.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 92.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 92.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 91.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 91.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 90.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 90.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 90.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 90.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 89.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 89.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 88.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 88.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 88.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 88.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 88.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 88.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 88.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 88.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 88.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 87.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 87.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 87.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 87.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 86.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 86.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 85.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 85.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 85.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 85.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 84.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 84.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 84.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 84.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 84.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 83.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 83.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 83.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 82.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 82.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 82.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 82.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 82.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 82.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 82.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 81.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 81.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 81.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 81.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 81.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 80.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 80.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 80.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 80.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 80.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 80.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 79.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 79.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 78.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 78.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 78.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 77.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 77.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 77.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 77.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 76.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 76.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 76.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 75.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 75.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 75.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 75.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 75.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 75.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 74.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 74.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 74.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 73.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 72.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 72.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 72.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 72.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 71.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 71.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 70.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 69.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 68.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 68.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 67.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 67.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 67.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 66.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 65.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 65.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 64.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 64.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 63.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 63.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 62.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 60.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 57.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 56.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 56.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 55.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 51.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 75.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 75.8
FF:10024-101D6 15,40,85 years, mixed 75.8

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