BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.7 nTPM
HPA:79.7 nTPM
GTEx:155.5 nTPM
FANTOM5:25.2 Scaled Tags Per Million
Pig:6.8 nTPM
Mouse:6.6 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 79.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 69.7
2481 Female, age 94, left hemisphere 91.4
2290 Female, age 72, unknown 81.3
2289 Male, age 61, right hemisphere 78.5
1857 Female, age 85, left hemisphere 71.7
2288 Male, age 75, left hemisphere 65.0
2846 Female, age 79, unknown 58.8
1854 Male, age 80, left hemisphere 58.0
1781 Male, age 74, unknown 53.2
Claustrum
nTPM: 57.3
2645 Female, age 72, unknown 67.4
2568 Male, age 61, both hemispheres 62.9
2196 Female, age 79, unknown 59.7
2284 Female, age 91, both hemispheres 59.5
1956 Male, age 74, unknown 58.7
2491 Male, age 75, both hemispheres 54.5
2198 Male, age 80, both hemispheres 54.3
2392 Female, age 94, both hemispheres 50.2
2292 Female, age 85, both hemispheres 48.5
Globus pallidus, externus
nTPM: 79.7
2646 Male, age 61, right hemisphere 109.4
1996 Male, age 80, right hemisphere 87.2
2772 Female, age 79, unknown 78.9
2567 Female, age 72, unknown 68.7
2395 Male, age 75, both hemispheres 54.6
Globus pallidus, internus
nTPM: 68.6
2483 Female, age 94, right hemisphere 97.6
1818 Male, age 74, unknown 68.2
2037 Male, age 80, right hemisphere 68.1
2287 Male, age 75, right hemisphere 67.5
2778 Female, age 91, both hemispheres 63.4
2111 Female, age 85, right hemisphere 59.2
2566 Female, age 72, unknown 56.3
Nucleus accumbens
nTPM: 63.2
2824 Male, age 61, right hemisphere 75.1
2286 Male, age 75, left hemisphere 68.4
1806 Female, age 85, left hemisphere 65.1
1783 Male, age 74, unknown 64.2
2732 Male, age 80, right hemisphere 58.9
1856 Female, age 91, right hemisphere 58.3
2698 Female, age 72, unknown 57.7
2391 Female, age 94, left hemisphere 57.5
Nucleus basalis of Meynert
nTPM: 71.4
2569 Male, age 61, both hemispheres 128.5
2484 Female, age 94, left hemisphere 59.2
2393 Male, age 80, right hemisphere 55.5
2821 Male, age 75, both hemispheres 42.3
Nucleus of the diagonal band
nTPM: 54.6
1979 Male, age 74, unknown 67.8
1812 Female, age 91, both hemispheres 59.5
2775 Male, age 80, right hemisphere 51.3
2195 Female, age 85, both hemispheres 47.5
2029 Male, age 61, right hemisphere 46.8
Olfactory tubercle
nTPM: 53.0
1846 Male, age 80, right hemisphere 55.5
2487 Female, age 94, left hemisphere 53.8
2856 Male, age 75, right hemisphere 53.3
1998 Female, age 91, both hemispheres 49.5
Putamen
nTPM: 62.5
2482 Female, age 94, left hemisphere 72.4
2489 Female, age 72, unknown 65.4
1829 Male, age 74, unknown 64.4
2647 Male, age 75, left hemisphere 61.2
2466 Female, age 79, unknown 59.6
1937 Female, age 91, right hemisphere 59.5
1838 Male, age 80, right hemisphere 54.7
Septal nuclei
nTPM: 59.7
2199 Male, age 80, right hemisphere 72.0
2059 Female, age 85, both hemispheres 66.9
2394 Male, age 61, left hemisphere 58.2
2009 Female, age 91, both hemispheres 58.1
1960 Male, age 74, unknown 57.7
2629 Female, age 94, right hemisphere 53.2
2031 Female, age 72, unknown 51.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 155.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 155.5
Samples: 246

Max nTPM: 303.3
Min nTPM: 43.8
Std nTPM: 49.8
Median nTPM: 147.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 303.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 291.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 283.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 282.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 281.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 279.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 278.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 275.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 271.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 271.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 269.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 149.7
Samples: 246

Max nTPM: 540.2
Min nTPM: 18.5
Std nTPM: 65.9
Median nTPM: 135.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 540.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 411.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 364.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 364.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 355.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 337.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 307.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 306.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 301.2
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 291.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 284.0
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Brain - Putamen (basal ganglia)
Average nTPM: 139.7
Samples: 205

Max nTPM: 321.2
Min nTPM: 61.4
Std nTPM: 47.9
Median nTPM: 128.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 321.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 318.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 299.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 273.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 271.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 261.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 240.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 234.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 233.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 232.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 230.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.2
FF:10164-103B2 76 years, female 25.2
Globus pallidus
Scaled Tags Per Million: 15.9
FF:10161-103A8 76 years, female 20.7
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 14.2
FF:10037-101F1 23-56 years, mixed 14.2
Putamen
Scaled Tags Per Million: 19.8
FF:10176-103C5 60 years, female 19.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.8
Pig sample Sample description nTPM
Caudate
nTPM: 6.8
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 7.5
Sample C Male 7.3
Sample D Male 6.8
Putamen
nTPM: 6.0
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 6.9
Sample C Male 6.1
Sample D Male 6.6
Septum
nTPM: 6.4
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.4
Sample A Female 7.2
Sample B Female 6.6
Sample C Male 6.4
Sample D Male 5.4
Ventral pallidum
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.6
Sample A Female 6.7
Sample B Female 6.5
Sample C Male 5.6
Sample D Male 5.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.5
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.5
Sample A Male 6.1
Sample B Male 7.3
Sample C Female 5.5
Sample D Female 7.0
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.7
Sample A Male 7.0
Sample B Male 5.8
Sample C Female 6.5
Sample D Female 5.7
Ventral forebrain
nTPM: 6.7
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.9
Sample A Male 6.2
Sample B Male 5.9
Sample C Female 8.3
Sample D Female 6.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
75990861 Antisense, RP_060608_01_F10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
75990861 Antisense, RP_060608_01_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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