MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.2 nTPM
HPA:62.2 nTPM
GTEx:111.2 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:4.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.4
2586 Male, age 75, left hemisphere 94.6
2828 Female, age 72, unknown 74.2
1870 Female, age 42, unknown 59.1
2019 Male, age 18, unknown 54.3
2219 Male, age 76, both hemispheres 54.2
2411 Female, age 72, unknown 53.1
1833 Male, age 53, unknown 52.1
1830 Male, age 51, unknown 50.9
1827 Male, age 72, unknown 50.6
2666 Male, age 74, left hemisphere 50.5
Dorsal raphe nucleus
nTPM: 58.8
2016 Female, age 72, unknown 70.7
2047 Male, age 72, unknown 60.0
2298 Female, age 72, unknown 57.1
1828 Male, age 53, unknown 55.6
2750 Male, age 76, both hemispheres 50.2
Inferior colliculus
nTPM: 47.3
1848 Female, age 42, unknown 52.4
2849 Male, age 72, unknown 47.7
1890 Male, age 53, unknown 46.6
2097 Female, age 72, unknown 42.5
Median raphe nucleus
nTPM: 51.7
2220 Male, age 76, midline 51.7
Pedunculopontine tegmental nucleus
nTPM: 44.1
1921 Female, age 85, both hemispheres 53.0
2334 Male, age 80, both hemispheres 50.1
2338 Male, age 61, both hemispheres 29.1
Periaquaductal grey, anterior
nTPM: 61.2
2502 Female, age 75, unknown 66.7
1795 Male, age 51, unknown 64.2
1947 Male, age 18, unknown 52.7
Periaquaductal grey, dorsal
nTPM: 53.9
1840 Male, age 53, unknown 58.9
1831 Male, age 72, unknown 52.5
2464 Female, age 72, unknown 52.1
2850 Male, age 76, both hemispheres 52.1
Periaquaductal grey, lateral
nTPM: 55.6
2053 Male, age 18, unknown 64.7
2140 Male, age 76, both hemispheres 51.0
2272 Male, age 74, both hemispheres 51.0
Pretectal area
nTPM: 57.3
2407 Male, age 75, both hemispheres 77.6
2273 Male, age 74, both hemispheres 71.8
2667 Female, age 75, unknown 60.7
2825 Male, age 18, unknown 58.8
2224 Female, age 72, unknown 57.9
1815 Male, age 53, unknown 55.9
2007 Male, age 72, unknown 51.6
1944 Female, age 72, unknown 50.9
1816 Male, age 51, unknown 50.0
1817 Female, age 42, unknown 49.5
2316 Male, age 76, right hemisphere 45.5
Red nucleus
nTPM: 52.3
2503 Female, age 72, unknown 60.9
2769 Male, age 72, unknown 59.1
2227 Male, age 72, unknown 58.6
2584 Male, age 75, left hemisphere 55.8
2588 Male, age 74, left hemisphere 54.6
1954 Female, age 42, unknown 53.7
1904 Male, age 53, unknown 53.2
2785 Male, age 18, unknown 51.6
1821 Female, age 72, unknown 51.3
1865 Male, age 51, unknown 49.6
2725 Female, age 75, unknown 40.8
2823 Male, age 76, right hemisphere 38.8
Substantia nigra
nTPM: 58.2
2583 Male, age 75, right hemisphere 68.6
2699 Male, age 18, unknown 63.9
1851 Male, age 51, unknown 62.1
2590 Female, age 75, unknown 61.2
1916 Female, age 42, unknown 59.9
2665 Male, age 74, both hemispheres 58.9
1941 Male, age 53, unknown 56.5
1889 Female, age 72, unknown 52.6
2241 Male, age 72, unknown 50.3
2409 Female, age 72, unknown 48.3
Superior colliculus
nTPM: 62.2
2664 Male, age 75, both hemispheres 106.4
1995 Male, age 72, unknown 66.2
2668 Female, age 75, unknown 62.5
1796 Male, age 53, unknown 61.5
1839 Male, age 51, unknown 61.3
1913 Female, age 42, unknown 60.1
2587 Male, age 74, left hemisphere 55.9
2261 Male, age 18, unknown 55.1
2087 Female, age 72, unknown 50.8
1895 Male, age 76, right hemisphere 42.7
Ventral tegmental area
nTPM: 58.7
1942 Male, age 51, unknown 68.4
2021 Male, age 53, unknown 61.6
1915 Female, age 42, unknown 60.5
2223 Female, age 72, unknown 57.9
2410 Female, age 72, unknown 55.1
2218 Male, age 76, both hemispheres 48.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.2
Samples: 139

Max nTPM: 392.0
Min nTPM: 40.4
Std nTPM: 47.2
Median nTPM: 102.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 392.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 238.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 233.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 228.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 207.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 200.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 195.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 195.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 189.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 189.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 184.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.0
FF:10158-103A5 76 years, female 13.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.0
Sample C Male 5.1
Sample D Male 6.2
Periaqueductal gray
nTPM: 4.0
Samples: 3

Max nTPM: 4.4
Min nTPM: 3.6
Sample B Female 3.9
Sample C Male 4.4
Sample D Male 3.6
Substantia nigra
nTPM: 5.3
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.0
Sample A Female 6.1
Sample B Female 6.2
Sample C Male 4.8
Sample D Male 4.0
Superior colliculi
nTPM: 7.2
Samples: 4

Max nTPM: 11.5
Min nTPM: 4.5
Sample A Female 7.9
Sample B Female 11.5
Sample C Male 4.5
Sample D Male 4.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.1
Sample A Male 5.1
Sample B Male 4.5
Sample C Female 4.1
Sample D Female 4.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75990861 Antisense, RP_060608_01_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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